asxcwrapper

#!/bin/tcsh -f
# usage: asxcswrapper #frames #frames/job datafile surrprefix

# set arguments
@ frames = $1
@ jobframes = $2
set datafile = $3
set surrprefix = $4
# figure out the number of jobs required
# @ njobs = $frames / $jobframes
# check for remainder
# @ remjobs = $frames % $jobframes
# if( $remjobs > 0) then
# 	@ njobs++
# endif

# submit job that will put everything together
# we need to do this since using -W depend=afterok:jobs requires us to keep
# track of the job ids and that was creating a string that was too long
# set jobid = `echo 'cd $PBS_O_WORKDIR; /ccb/home/syen/matlab/Cat/bin/combineSurrSynchrony '"$frames $sets" | qsub -W depend=on:$njobs -j oe -o $PWD/qsubfinal -N combineasxc -`

@ startframe = 1
@ endframe = $jobframes
@ addframe = $endframe - $startframe
# check startframe in case endframe was at frames on the previous run
# and then startframe will be at frames+1 while endframe will be
# at frames which will cause an error
while( $startframe <= $frames )
# 	echo 'hostname; unset DISPLAY; cd $PBS_O_WORKDIR;'"hostname > asxcout${startframe}; /ccb/home/syen/matlab/Cat/bin/asxcSurrSynchrony $startframe $endframe $sets >> asxcout${startframe} 2>&1" | qsub -W depend=beforeok:$jobid -V -l nodes=1 -j oe -o $PWD/qsub${startframe} -N asxc -
	echo 'hostname; unset DISPLAY; cd $PBS_O_WORKDIR;'"hostname > asxcout${startframe}; /ccb/home/syen/matlab/Cat/bin/asxcSurrSynchrony $startframe $endframe $datafile $surrprefix >> asxcout${startframe} 2>&1" | qsub -V -l nodes=1 -j oe -o $PWD/qsub${startframe} -N asxc -
	@ startframe = $endframe + 1
	@ endframe = $startframe + $addframe
	if( $endframe > $frames ) then
		@ endframe = $frames
	endif
end