Skip to content

Commit 08e33e9

Browse files
authored
Add Philis MRS acquisition (.SDAT/.SPAR) and image in the same geometry (#26)
1 parent c3f33ab commit 08e33e9

File tree

4 files changed

+304
-0
lines changed

4 files changed

+304
-0
lines changed
8 KB
Binary file not shown.
Lines changed: 218 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,218 @@
1+
!--------------------------------------------------------------------
2+
3+
!
4+
5+
!
6+
7+
! CAUTION - Investigational device.
8+
9+
! Limited by Federal Law to investigational use.
10+
11+
!
12+
13+
!
14+
15+
! GYROSCAN spectro parameter file.
16+
17+
! Last revised 05-July-2007.
18+
19+
!--------------------------------------------------------------------
20+
21+
! This file contains time domain data in the spectral dimension.
22+
23+
! S15/ACS: set of *.SPAR and *.SDAT files is created, (dataformat: VAX CPX floats)
24+
25+
!--------------------------------------------------------------------
26+
27+
examination_name : 2026_02_11_ShimmingToolboxTest
28+
29+
scan_id : Dummy_SV_PRESS_35
30+
31+
scan_date : 2026.02.11 08:01:38
32+
33+
patient_name : 2026_02_11_ShimmingToolboxTest
34+
35+
patient_birth_date : 1983.01.01
36+
37+
patient_position : "head_first"
38+
39+
patient_orientation : "supine"
40+
41+
samples : 1024
42+
43+
rows : 1
44+
45+
synthesizer_frequency : 127742016
46+
47+
offset_frequency : 0
48+
49+
sample_frequency : 2000
50+
51+
echo_nr : 1
52+
53+
mix_number : 1
54+
55+
nucleus : 1H
56+
57+
t0_mu1_direction : 0
58+
59+
echo_time : 34.01660156
60+
61+
repetition_time : 2000
62+
63+
averages : 1
64+
65+
volume_selection_enable : "yes"
66+
67+
volumes : 1
68+
69+
ap_size : 7
70+
71+
lr_size : 9
72+
73+
cc_size : 35
74+
75+
ap_off_center : 0
76+
77+
lr_off_center : 11
78+
79+
cc_off_center : -9
80+
81+
ap_angulation : 0
82+
83+
lr_angulation : 0
84+
85+
cc_angulation : 0
86+
87+
volume_selection_method : 1
88+
89+
phase_encoding_enable : "no"
90+
91+
t1_measurement_enable : "no"
92+
93+
t2_measurement_enable : "no"
94+
95+
time_series_enable : "no"
96+
97+
image_plane_slice_thickness : 0
98+
99+
slice_distance : 0
100+
101+
nr_of_slices_for_multislice : 1
102+
103+
Spec.image in plane transf : "plusA-plusB"
104+
105+
!---------------------------------------------
106+
107+
spec_data_type : cf
108+
109+
spec_sample_extension :[V]
110+
111+
!--------------------
112+
113+
! Column parameters
114+
115+
!--------------------
116+
117+
spec_num_col : 1024
118+
119+
spec_col_lower_val : -1000
120+
121+
spec_col_upper_val : -999.4879761
122+
123+
spec_col_extension :[sec]
124+
125+
!-----------------
126+
127+
! Row parameters
128+
129+
!-----------------
130+
131+
spec_num_row : 1
132+
133+
spec_row_lower_val : 1
134+
135+
spec_row_upper_val : 1
136+
137+
spec_row_extension :[index]
138+
139+
!-------------------------------------------------
140+
141+
! Extra parameters in order to make data transfer
142+
143+
! possible between S15/ACS and SUNSPEC:
144+
145+
!-------------------------------------------------
146+
147+
num_dimensions : 2
148+
149+
!-------------------------------------------------
150+
151+
dim1_ext :[sec]
152+
153+
dim1_pnts : 1024
154+
155+
dim1_low_val : -1000
156+
157+
dim1_step : 0.0005000000237
158+
159+
dim1_direction : mu1
160+
161+
dim1_t0_point : 0
162+
163+
!-----------------------------------------------------
164+
165+
dim2_ext :[num]
166+
167+
dim2_pnts : 1
168+
169+
dim2_low_val : 1.000000
170+
171+
dim2_step : 1.000000
172+
173+
dim2_direction : x
174+
175+
dim2_t0_point : 50
176+
177+
!-----------------------------------------------------
178+
179+
dim3_ext :[num]
180+
181+
dim3_pnts : 1
182+
183+
dim3_low_val : 1.000000
184+
185+
dim3_step : 1.000000
186+
187+
dim3_direction : y
188+
189+
dim3_t0_point : 50
190+
191+
!---------------------------------------------------
192+
193+
! Additional parameters
194+
195+
!---------------------------------------------------
196+
197+
echo_acquisition : ECHO
198+
199+
TSI_factor : 1
200+
201+
spectrum_echo_time : 34.01660156
202+
203+
spectrum_inversion_time : 0
204+
205+
image_chemical_shift : 0
206+
207+
resp_motion_comp_technique : NONE
208+
209+
de_coupling : NO
210+
211+
equipment_sw_verions : 5.9.0 ; .9.0 ;
212+
213+
placeholder1 :
214+
215+
placeholder2 :
216+
217+
!-----------------------------------------------------
218+

ds_mrs/sub-2_magnitude1.json

Lines changed: 86 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,86 @@
1+
{
2+
"Modality": "MR",
3+
"MagneticFieldStrength": 3,
4+
"ImagingFrequency": 127.742072,
5+
"Manufacturer": "Philips",
6+
"ManufacturersModelName": "MR 7700",
7+
"InstitutionName": "UBC MRI Research Center",
8+
"InstitutionalDepartmentName": "CBH MR",
9+
"InstitutionAddress": "2215 Wesbrook Mall",
10+
"DeviceSerialNumber": "45052",
11+
"StationName": "PHILIPS-1KQ0JBG",
12+
"BodyPart": "BRAIN",
13+
"PatientPosition": "HFS",
14+
"ProcedureStepDescription": "2026_02_11_ShimmingToolboxTest",
15+
"SoftwareVersions": "5.9.0\\5.9.0.0",
16+
"MRAcquisitionType": "2D",
17+
"StudyDescription": "2026_02_11_ShimmingToolboxTest",
18+
"SeriesDescription": "B0 map",
19+
"ProtocolName": "WIP B0 map",
20+
"ScanningSequence": "GR",
21+
"SequenceVariant": "SS",
22+
"ScanOptions": "OTHER",
23+
"PulseSequenceName": "FFE",
24+
"ImageType": [
25+
"ORIGINAL",
26+
"PRIMARY",
27+
"M",
28+
"FFE",
29+
"M",
30+
"FFE",
31+
"MAGNITUDE"
32+
],
33+
"SeriesNumber": 601,
34+
"AcquisitionTime": "08:28:13.690000",
35+
"AcquisitionNumber": 6,
36+
"PhilipsRescaleSlope": 1.44518,
37+
"PhilipsRescaleIntercept": 0,
38+
"PhilipsScaleSlope": 0.0179768,
39+
"UsePhilipsFloatNotDisplayScaling": 1,
40+
"SliceThickness": 2,
41+
"SpacingBetweenSlices": 2,
42+
"SAR": 1.74212,
43+
"TablePosition": [
44+
0,
45+
0,
46+
0
47+
],
48+
"EchoNumber": 1,
49+
"EchoTime": 0.002303,
50+
"RepetitionTime": 0.650001,
51+
"MTState": false,
52+
"FlipAngle": 80,
53+
"CoilString": "MULTI COIL",
54+
"PercentPhaseFOV": 100,
55+
"PercentSampling": 100,
56+
"EchoTrainLength": 2,
57+
"PhaseEncodingSteps": 112,
58+
"FrequencyEncodingSteps": 112,
59+
"PhaseEncodingStepsOutOfPlane": 1,
60+
"AcquisitionMatrixPE": 112,
61+
"ReconMatrixPE": 112,
62+
"ParallelReductionFactorInPlane": 2,
63+
"ParallelAcquisitionTechnique": "SENSE",
64+
"WaterFatShift": 0.902871,
65+
"EstimatedEffectiveEchoSpacing": 1.24853e-05,
66+
"EstimatedTotalReadoutTime": 0.00138587,
67+
"AcquisitionDuration": 75.4001,
68+
"PixelBandwidth": 481,
69+
"PhaseEncodingAxis": "j",
70+
"ImageOrientationPatientDICOM": [
71+
1,
72+
0,
73+
0,
74+
0,
75+
1,
76+
0
77+
],
78+
"InPlanePhaseEncodingDirectionDICOM": "COL",
79+
"BidsGuess": [
80+
"anat",
81+
"_acq-SSGRFFEp20_run-601_echo-1_part-mag_T2starw"
82+
],
83+
"ConversionSoftware": "dcm2niix",
84+
"ConversionSoftwareVersion": "v1.0.20250505",
85+
"Dcm2bidsVersion": "3.2.0"
86+
}

ds_mrs/sub-2_magnitude1.nii.gz

654 KB
Binary file not shown.

0 commit comments

Comments
 (0)