download_ensembl is dependent on transcript-utils repo and need to run in python VE.

[hxin]

sidbdri-utils/scripts/download_ensembl.sh

Line 184 in 16fd58b

get_gene_lengths ${gtf_file} > ./gene_lengths.csv

This needs to be run in a python VE.

[hxin]

I think we are running this script on sidb, thus by default using the 'get_gene_lengths' from a local install.

I guess we can close this issue without further action @lweasel as transcript_utils repo is not updated as frequently, just need to keep in mind that whenever the transcript_utils repo updates affect this function, we need to re-install the python package for the new script to work.