This repository contains the modeling code used in the PNAS paper "Gene regulatory logic of the interferon-β enhancer is characterized by two selectively deployed modes of transcription factor synergy."
Citation for paper: A. Schiffman,Z. Cheng,D. Ourthiague, & A. Hoffmann, Gene regulatory logic of the interferon-β enhancer is characterized by two selectively deployed modes of transcription factor synergy, Proc. Natl. Acad. Sci. U.S.A. 122 (33) e2502800122, https://doi.org/10.1073/pnas.2502800122 (2025).