diff --git a/.github/workflows/lint-test.yml b/.github/workflows/lint-test.yml index 9bba5b231..470d88df0 100644 --- a/.github/workflows/lint-test.yml +++ b/.github/workflows/lint-test.yml @@ -102,12 +102,18 @@ jobs: if: steps.poetry-venvs.outputs.cache-hit != 'true' run: pnpm support:setup - - name: Create sample HDF5 file 🎨 - run: pnpm support:sample + - name: Create sample HDF5 files 🎨 + run: pnpm support:sample && pnpm support:sample --hsds - name: Start h5grove support server 🔌 run: pnpm support:h5grove & pnpm wait-on http://localhost:8888 -t 1m + - name: Start HSDS support server 🔌 + run: pnpm support:hsds & pnpm wait-on http-get://localhost:5101/?domain=/sample-hsds.h5 -t 1m + + - name: Load HSDS sample file 📥 + run: pnpm support:hsds:load + - name: Test 👓 run: pnpm test diff --git a/.gitignore b/.gitignore index 770b17198..9f9eada3a 100644 --- a/.gitignore +++ b/.gitignore @@ -7,10 +7,13 @@ dist*/ /cypress/snapshots/**/__diff_output__ /cypress/snapshots/**/__received_output__ +/support/hsds/root/ + .env.local .env.*.local .DS_Store Thumbs.db -*.log -*.tsbuildinfo + +**/*.log +**/*.tsbuildinfo diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 0d2b0799b..54cc796ae 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -306,8 +306,12 @@ install the recommended extensions. - `pnpm test --project ` - run Vitest on a specific project - `pnpm support:setup` - create/update Poetry environments required for [testing the providers](#providers-tests) -- `pnpm support:sample` - create `sample.h5` +- `pnpm support:sample` - create `sample.h5` (for h5grove and h5wasm) +- `pnpm support:sample --hsds` - create `sample-hsds.h5` (for HSDS) - `pnpm support:h5grove` - start h5grove support server +- `pnpm support:hsds` - start HSDS support server +- `pnpm support:hsds:load` - load HSDS sample file (HSDS support server must be + running in separate terminal) - `pnpm cypress` - open the [Cypress](https://docs.cypress.io/guides/overview/why-cypress.html) end-to-end test runner (local dev server must be running in separate terminal) @@ -380,11 +384,11 @@ when calling `pnpm test`. ### Providers -Two data providers are currently tested through their respective APIs: -`H5GroveApi` and `H5WasmApi`. Each API test (`-api.test.ts`) works as +The data providers are tested through their respective APIs: `H5GroveApi`, +`H5WasmApi` and `HsdsApi`. Each API test (`-api.test.ts`) works as follows: -1. It instanciates the API using a sample file called `sample.h5`, located in +1. It instanciates the API using a sample HDF5 file, located in `support/sample/dist`, that contains a lot of HDF5 datasets of various shapes and types. 1. It retrieves the values of all the datasets in the sample file and stores @@ -412,13 +416,24 @@ pyenv and Poetry: pyenv exec pnpm support:setup ``` -Once the Poetry environments are created, you can create `sample.h5`, start -h5grove and run the API tests: +Once the Poetry environments are created, create the sample files, start the +h5grove and HSDS support servers (h5wasm doesn't need one), and run the API +tests: ```bash -pyenv exec pnpm support:sample +# Create sample files +pyenv exec pnpm support:sample # for h5grove and h5wasm +pyenv exec pnpm support:sample --hsds # for HSDS + +# Start support servers in separate terminals pyenv exec pnpm support:h5grove -pnpm test api +pyenv exec pnpm support:hsds + +# Load sample file into HSDS +pyenv exec pnpm support:hsds:load + +# Run the API tests +pnpm test api # or `-api` for a specific provider's API test ``` > If the Python version specified in `.python-version` is globally available on @@ -440,6 +455,10 @@ environment lacks support for `float128`), you may it into the `support/sample/dist` folder. However, please beware that the file may not be up to date. +Environment variables defined in `.env.test` files, and overridden in +`.env.test.local` files, can be used to skip a provider's API test, change its +support server URL, or change its test file. + ### Visual regression Cypress is used for end-to-end testing but also for visual regression testing. diff --git a/package.json b/package.json index 04b2b5bcd..a65038150 100644 --- a/package.json +++ b/package.json @@ -30,9 +30,11 @@ "lint:root:eslint": "eslint --max-warnings=0", "lint:root:tsc": "tsc", "test": "vitest", - "support:setup": "poetry -C support/sample install && poetry -C support/h5grove install", + "support:setup": "poetry -C support/sample install && poetry -C support/h5grove install && poetry -C support/hsds install", "support:sample": "poetry -C support/sample run python create_h5_sample.py", "support:h5grove": "poetry -C support/h5grove run python tornado_app.py --basedir ../sample/dist", + "support:hsds": "rm -rf support/hsds/hs.log && poetry -C support/hsds run hsds --root_dir . --config_dir ./config --password_file ./config/passwd.txt", + "support:hsds:load": "rm -rf support/hsds/root/* && poetry -C support/hsds run hsload -e http://localhost:5101 -u test -p test --link ../sample/dist/sample-hsds.h5 /", "cypress": "cypress open --e2e", "cypress:run": "cypress run --e2e", "version": "pnpm -r sync-version && git add .", diff --git a/packages/app/.env.test b/packages/app/.env.test index d6504cd27..9c44d5044 100644 --- a/packages/app/.env.test +++ b/packages/app/.env.test @@ -3,6 +3,8 @@ # Copy and configure the variables below in your own `.env.test.local` file ##### +### h5grove API + # URL of h5grove support server VITE_H5GROVE_URL=http://localhost:8888 @@ -11,3 +13,14 @@ VITE_H5GROVE_TEST_FILE=sample.h5 # Set to `true` to skip testing h5grove API VITE_H5GROVE_SKIP= + +### HSDS API + +# URL of HSDS support server +VITE_HSDS_URL=http://localhost:5101 + +# Name of test domain +VITE_HSDS_TEST_DOMAIN=/sample-hsds.h5 + +# Set to `true` to skip testing HSDS API +VITE_HSDS_SKIP= diff --git a/packages/app/src/providers/h5grove/h5grove-api.test.ts b/packages/app/src/providers/h5grove/h5grove-api.test.ts index 5ff6e9e2d..46d8bdc6f 100644 --- a/packages/app/src/providers/h5grove/h5grove-api.test.ts +++ b/packages/app/src/providers/h5grove/h5grove-api.test.ts @@ -13,16 +13,16 @@ import { H5GroveApi } from './h5grove-api'; const SKIP = import.meta.env.VITE_H5GROVE_SKIP === 'true'; const H5GROVE_URL = import.meta.env.VITE_H5GROVE_URL; -const TEST_FILE = import.meta.env.VITE_H5GROVE_TEST_FILE; +const H5GROVE_TEST_FILE = import.meta.env.VITE_H5GROVE_TEST_FILE; assertEnvVar(H5GROVE_URL, 'VITE_H5GROVE_URL'); -assertEnvVar(TEST_FILE, 'VITE_TEST_FILE'); +assertEnvVar(H5GROVE_TEST_FILE, 'VITE_H5GROVE_TEST_FILE'); beforeAll(async () => { await assertListeningAt(H5GROVE_URL); }); test.skipIf(SKIP)('test file matches snapshot', async () => { - const api = new H5GroveApi(H5GROVE_URL, TEST_FILE); + const api = new H5GroveApi(H5GROVE_URL, H5GROVE_TEST_FILE); const root = await api.getEntity('/'); assertGroup(root); diff --git a/packages/app/src/providers/h5grove/h5grove-api.ts b/packages/app/src/providers/h5grove/h5grove-api.ts index 88aee114b..597a2dfe7 100644 --- a/packages/app/src/providers/h5grove/h5grove-api.ts +++ b/packages/app/src/providers/h5grove/h5grove-api.ts @@ -18,7 +18,7 @@ import { } from '@h5web/shared/vis-models'; import { DataProviderApi } from '../api'; -import { type Fetcher, type ValuesStoreParams } from '../models'; +import { type ValuesStoreParams } from '../models'; import { createBasicFetcher, FetcherError, toJSON } from '../utils'; import { type H5GroveAttrValuesResponse, @@ -38,7 +38,7 @@ export class H5GroveApi extends DataProviderApi { public constructor( private readonly baseURL: string, filepath: string, - private readonly fetcher: Fetcher = createBasicFetcher(), + private readonly fetcher = createBasicFetcher(), private readonly _getExportURL?: DataProviderApi['getExportURL'], ) { super(filepath); diff --git a/packages/app/src/providers/hsds/__snapshots__/hsds-api.test.ts.snap b/packages/app/src/providers/hsds/__snapshots__/hsds-api.test.ts.snap new file mode 100644 index 000000000..63501c3da Binary files /dev/null and b/packages/app/src/providers/hsds/__snapshots__/hsds-api.test.ts.snap differ diff --git a/packages/app/src/providers/hsds/hsds-api.test.ts b/packages/app/src/providers/hsds/hsds-api.test.ts new file mode 100644 index 000000000..224395760 --- /dev/null +++ b/packages/app/src/providers/hsds/hsds-api.test.ts @@ -0,0 +1,45 @@ +import { + assertDataset, + assertEnvVar, + assertGroup, + assertGroupWithChildren, + hasNonNullShape, +} from '@h5web/shared/guards'; +import { beforeAll, expect, test } from 'vitest'; + +import { assertListeningAt } from '../../test-utils'; +import { getValueOrError } from '../utils'; +import { HsdsApi } from './hsds-api'; + +const SKIP = import.meta.env.VITE_HSDS_SKIP === 'true'; +const HSDS_URL = import.meta.env.VITE_HSDS_URL; +const HSDS_TEST_DOMAIN = import.meta.env.VITE_HSDS_TEST_DOMAIN; +assertEnvVar(HSDS_URL, 'VITE_HSDS_URL'); +assertEnvVar(HSDS_TEST_DOMAIN, 'VITE_HSDS_TEST_DOMAIN'); + +beforeAll(async () => { + await assertListeningAt(HSDS_URL); +}); + +test.skipIf(SKIP)('test file matches snapshot', async () => { + const api = new HsdsApi(HSDS_URL, HSDS_TEST_DOMAIN); + + const root = await api.getEntity('/'); + assertGroup(root); + assertGroupWithChildren(root); + + const children = await Promise.all( + root.children.map(async (child) => { + assertDataset(child); + const { name, shape, type, rawType } = child; + + const value = hasNonNullShape(child) + ? await getValueOrError(api, child) + : null; + + return { name, shape, type, rawType, value }; + }), + ); + + expect(children).toMatchSnapshot(); +}); diff --git a/packages/app/src/providers/hsds/hsds-api.ts b/packages/app/src/providers/hsds/hsds-api.ts index 5cb362580..076a2db64 100644 --- a/packages/app/src/providers/hsds/hsds-api.ts +++ b/packages/app/src/providers/hsds/hsds-api.ts @@ -24,8 +24,8 @@ import { } from '@h5web/shared/vis-models'; import { DataProviderApi } from '../api'; -import { type Fetcher, type ValuesStoreParams } from '../models'; -import { FetcherError, toJSON } from '../utils'; +import { type ValuesStoreParams } from '../models'; +import { createBasicFetcher, FetcherError, toJSON } from '../utils'; import { type BaseHsdsEntity, type HsdsAttribute, @@ -60,7 +60,7 @@ export class HsdsApi extends DataProviderApi { public constructor( private readonly baseURL: string, filepath: string, - private readonly fetcher: Fetcher, + private readonly fetcher = createBasicFetcher(), private readonly _getExportURL?: DataProviderApi['getExportURL'], ) { super(filepath); diff --git a/support/hsds/config/override.yml b/support/hsds/config/override.yml new file mode 100644 index 000000000..5f6a8d140 --- /dev/null +++ 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b/support/hsds/poetry.toml @@ -0,0 +1,2 @@ +[virtualenvs] +prefer-active-python = true diff --git a/support/hsds/pyproject.toml b/support/hsds/pyproject.toml new file mode 100644 index 000000000..f47ee5b12 --- /dev/null +++ b/support/hsds/pyproject.toml @@ -0,0 +1,18 @@ +[project] +name = "hsds-support" +version = "0.1.0" +description = "HSDS server for testing purposes" +authors = [{name = "ESRF"}] +requires-python = ">=3.12" +dependencies = [ + "hsds", + "h5pyd" +] + +[tool.poetry] +package-mode = false +requires-poetry = ">=2" + +[build-system] +requires = ["poetry-core>=2"] +build-backend = "poetry.core.masonry.api" diff --git a/support/sample/create_h5_sample.py b/support/sample/create_h5_sample.py index 5f18d9271..d98d31a95 100644 --- a/support/sample/create_h5_sample.py +++ b/support/sample/create_h5_sample.py @@ -1,5 +1,6 @@ import os import sys +import argparse import h5py import numpy as np @@ -10,6 +11,12 @@ DIST_PATH = os.path.join(BASE_PATH, "dist") os.makedirs(DIST_PATH, exist_ok=True) +parser = argparse.ArgumentParser() +parser.add_argument("--hsds", action=argparse.BooleanOptionalAction) +args = parser.parse_args() + +filename = "sample-hsds.h5" if args.hsds else "sample.h5" + h5py.get_config().track_order = True @@ -35,7 +42,7 @@ def print_h5t_class(dataset): print("H5T_class=" + str(dataset.id.get_type().get_class())) -with h5py.File(os.path.join(DIST_PATH, "sample.h5"), "w") as h5: +with h5py.File(os.path.join(DIST_PATH, filename), "w") as h5: # === H5T_INTEGER === add_scalar(h5, "int8", np.int8(np.iinfo(np.int8).min)) @@ -86,12 +93,13 @@ def print_h5t_class(dataset): np.array([[0, 1, np.inf, 3, 4], [3, 4, np.nan, 6, 7], [6, 7, np.NINF, 9, 10]]), ) - add_scalar(h5, "float128", np.float128(np.finfo(np.float128).smallest_normal)) - add_array( - h5, - "float128", - np.array([[0, 1, 2], [3, 4, np.finfo(np.float128).max]], np.float128), - ) + if not args.hsds: + add_scalar(h5, "float128", np.float128(np.finfo(np.float128).smallest_normal)) + add_array( + h5, + "float128", + np.array([[0, 1, 2], [3, 4, np.finfo(np.float128).max]], np.float128), + ) # === H5T_TIME === @@ -148,16 +156,21 @@ def print_h5t_class(dataset): add_array( h5, "complex128", np.array([[1 + 2j, 3 + 4j], [5 + 6j, 7 + 8j]], np.complex128) ), - add_scalar( - h5, - "complex256", - np.complex256( - np.finfo(np.complex256).smallest_normal + np.finfo(np.complex256).max * 1j + + if not args.hsds: + add_scalar( + h5, + "complex256", + np.complex256( + np.finfo(np.complex256).smallest_normal + + np.finfo(np.complex256).max * 1j + ), + ) + add_array( + h5, + "complex256", + np.array([[1 + 2j, 3 + 4j], [5 + 6j, 7 + 8j]], np.complex256), ), - ) - add_array( - h5, "complex256", np.array([[1 + 2j, 3 + 4j], [5 + 6j, 7 + 8j]], np.complex256) - ), add_scalar( h5, @@ -183,21 +196,22 @@ def print_h5t_class(dataset): ], ), ) - add_scalar( - h5, - "compound_nested", - ((True, 1 + 2j, 3),), - [ - ( - "nested", - [ - ("bool", np.bool_), - ("cplx", np.complex64), - ("bigint", np.int64), - ], - ) - ], - ) + if not args.hsds: + add_scalar( + h5, + "compound_nested", + ((True, 1 + 2j, 3),), + [ + ( + "nested", + [ + ("bool", np.bool_), + ("cplx", np.complex64), + ("bigint", np.int64), + ], + ) + ], + ) add_array( h5, @@ -224,12 +238,13 @@ def print_h5t_class(dataset): # === H5T_REFERENCE === add_scalar(h5, "reference", for_ref.ref, h5py.ref_dtype) - add_scalar( - h5, - "reference_region", - for_ref.regionref[0:1], - h5py.regionref_dtype, - ) + if not args.hsds: + add_scalar( + h5, + "reference_region", + for_ref.regionref[0:1], + h5py.regionref_dtype, + ) # === H5T_ENUM === @@ -285,12 +300,13 @@ def print_h5t_class(dataset): vlen_array[1] = [0, 1] vlen_array[2] = [0, 1, 2] - vlen_array = add_array( - h5, "vlen_utf8", shape=(3,), dtype=h5py.vlen_dtype(h5py.string_dtype()) - ) - vlen_array[0] = ["a"] - vlen_array[1] = ["a", "bc"] - vlen_array[2] = ["a", "bc", "def"] + if not args.hsds: + vlen_array = add_array( + h5, "vlen_utf8", shape=(3,), dtype=h5py.vlen_dtype(h5py.string_dtype()) + ) + vlen_array[0] = ["a"] + vlen_array[1] = ["a", "bc"] + vlen_array[2] = ["a", "bc", "def"] # === H5T_ARRAY ===