1.1.2: 2022/12/16

This is a bug fix version.

What's Changed

• silx.gui:

  • Fixed support of PySide 6.4 enums (PR #3737, #3738)

  • Fixed OpenGL version parsing (PR #3733, #3738)

  • silx.gui.plot:

    • Fixed issue when PlotWidget has a size of 0 (PR #3736, #3738)
    • Fixed reset of interaction when closing mask tool (PR #3735, #3738)

• Miscellaneous: Updated Debian packaging (PR #3732, #3738)

Full Changelog: v1.1.1...v1.1.2

1.1.1: 2022/11/30

What's Change

This is a bug fix version:

• Fixed support of pint >= 0.20 (PR #3725, #3728)
• Fixed continuous integration (PR #3727, #3728)
• Updated changelog (PR #3729)

Full Changelog: v1.1.0...v1.1.1

1.1.0: 2022/10/27

This is the last version of silx supporting Python 3.6 and PySide2.
Next version will require Python >= 3.7

This is the first version of silx supporting PyQt6 (for Qt6).
Please note that PyQt6 >= v6.3.0 is required.

Download Windows installer.

What's changed

• silx view:
  • Improved wildcard support in filename and data path (PR #3663)
  • Enabled plot grid by default for curve plots (PR #3667)
  • Fixed refresh for content opened as file.h5::/path (PR #3665)
• silx.gui:
  • Added support of PyQt6 >= 6.3.0 (PR #3655)
  • Fixed matplotlib>=3.6.0 and PySide6 support (PR #3639)
  • Fixed PySide6 >=6.2.2 support (PR #3581)
  • Fixed Python 3.10 with PyQt5 support (PR #3591)
  • Fixed crashes on exit when deriving QApplication (PR #3588)
  • Deprecated PySide2 support (PR #3648)
  • Fixed: raise exception early when using a version of PyQt5 incompatible with Python 3.10 (PR #3694)
  • silx.gui.data:
    • Updated: Do not keep aspect ratio in NXdata image views when axes @units are different (PR #3660)
    • silx.gui.data.ArrayTableWidget: Updated to edit without clearing previous data (PR #3686)
    • silx.gui.data.DataViewer: Added selectionChanged signal (PR #3646)
    • silx.gui.data.Hdf5TableView: Fixed for virtual datasets in the same file (PR #3572)
  • silx.gui.dialog.ColormapDialog: Updated layout and presentation of the features (PR #3671, #3609)
  • silx.gui.hdf5: Fixed issue with unsupported hdf5 entity (e.g. datatype) (PR #3643)
  • silx.gui.plot:
    • silx.gui.plot.items:
      • Added BandROI item (PR #3680, #3702, #3707)
      • Updated to take errorbars into account for item bounds (PR #3647)
      • Fixed ArcROI display (PR #3617)
      • Fixed error logs for scatter triangle visualisation with aligned points (PR #3644)
    • silx.gui.plot.MaskToolsWidget: Changed mask load/save default directory (PR #3704)
    • silx.gui.plot.PlotWidget:
      • Fixed time axis with values outside of supported range ]0, 10000[ years (PR 3597)
      • Fixed matplotlib backend replot failure under specific conditions (PR #3590)
      • silx.gui.PlotWidget's OpenGL backend:
        • Added support of LaTex-like math syntax to text display (PR #3600)
        • Updated text label background to be less transparent (PR #3593)
        • Fixed dashed curve rendering (PR #3596)
        • Fixed image rendering of arcsinh colormap for uint8 and uint16 data (PR #3604)
        • Fixed rendering on some GPU (PR #3695)
        • Fixed empty text support (PR #3701)
    • Fixed: Avoid rendering when OpenGL version/extension check fails (PR #3707)
    • silx.gui.plot.PlotWindow: Fixed management of DockWidgets when showing/hiding the PlotWindow (PR #3631)
    • silx.gui.plot.PositionInfo: Improved picking (PR #3640)
    • silx.gui.plot.StackView: Updated toolbar implementation (PR #3697)
    • silx.gui.plot.stats: Fixed warnings when all data is outside the selected stats region (PR #3659)
    • silx.gui.plot.tools:
      • Added snapping to profile curve (PR #3640)
      • Fixed handling of disconnect exception (PR #3692)
      • Fixed label formatting for 2D profile tool (PR #3698)
      • Fixed computation of the slice profile (PR #3708)
  • silx.gui.utils.glutils.isOpenGLAvailable: Added possibility to check AA_ShareOpenGLContexts (PR #3688)
  • silx.gui.widgets.ElidedLabel: Fixed API inherited from QLabel (PR #3650, #3707)
• silx.io:
  • silx.io.dictdump:
    • Added "info" logs when an entity is not copied to the output HDF5 file dicttoh5 (PR #3664)
    • Added support of pint in dicttoh5 and dicttonx (PR #3683)
  • silx.io.nxdata:
    • Updated get_default to be more permissive and follow @default recursively (PR #3662)
    • Updated error dataset retrieval (PR #3657, #3672)
  • silx.io.specfile:
    • Fixed buffer overflow for too long motor or label (PR #3622)
    • Fixed missing data if there is a trailing space in the mca array (PR #3612)
  • silx.io.utils.retry: Added retry for generator functions (PR #3679)
• silx.math:
  • silx.math.histogram:
    • Added support of uint16 weights for LUT histogram (PR #3670)
    • Fixed Histogramnd computation on arrays with more than 2**31-1 samples (PR #3599)
  • silx.math.fft:
    • Added export_wisdom() and import_wisdom() (PR #3623)
    • Fixed normalization modes, notably account for regression in pyfftw normalization (PR #3625)
    • Fixed avoid creating OpenCL/Cuda contexts when not needed (PR #3587)
  • silx.math.fit: Updated documentation (PR #3582)
• silx.opencl: Updated OpenCL profiling, fixed memory leak (PR #3690)
• silx.utils.ExternalResources: Stored downloaded data checksum (PR #3580)
• Miscellaneous:
  • Added SILX_INSTALL_REQUIRES_STRIP build configuration environment variable (PR #3602)
  • Added optional use of sphinx_autodoc_typehints to generate the documentation (PR #3668)
  • Updated build and development tools to remove dependency to distutils and numpy.distutils (PR #3583, #3585, #3613, #3649, #3651, #3653, #3658, #3661, #3678)
  • Updated Windows installer (PR #3642)
  • Updated documentation (PR #3699, #3709)
  • Updated after 1.0.0 release (PR #3560, #3569)
  • Fixed tests and continuous integration (PR #3632, #3637, #3639, #3685)
  • Fixed Debian/Ubuntu packaging (PR #3693)
  • Cleaned-up Python 2 compatibility code (PR #3673)

Full Changelog: v1.0.0...v1.1.0

1.1.0rc0: 2022/10/19

See more..

What's Changed

• get master ready for 1.1.0 by @payno in #3560
• WIP: Integrate modifications from 0 1 by @payno in #3569
• Enhanced peak_search documentation by @t20100 in #3582
• Fixed build by NOT using setuptools>=60.0.0 by @t20100 in #3583
• store the checksum of downloaded data by @kif in #3580
• Fixed PySide6>= 6.2.2 support by @t20100 in #3581
• [GUI] Fixed Python 3.10/PyQt5 support by @vasole in #3591
• silx.gui.PlotWidget OpenGL backend: Make text label background less transparent by @t20100 in #3593
• [GUI] Prevent crashes on exit when deriving QApplication by @vasole in #3588
• silx.gui.plot.PlotWidget: Fixed dashed curve rendering with the OpenGL backend by @t20100 in #3596
• FFT: avoid creating opencl/cuda contexts when not needed by @pierrepaleo in #3587
• Histogramnd on large arrays by @pierrepaleo in #3599
• silx.gui.plot.PlotWidget: Fixed time axis with values outside of supported range ]0, 10000[ years by @t20100 in https://github.com//pull/3597
• build: Added SILX_INSTALL_REQUIRES_STRIP build configuration environment variable by @t20100 in #3602
• Build: setup.py cleanup by @t20100 in #3585
• silx.gui.plot.PlotWidget: Fixed OpenGL image rendering of arcsinh colormap for uint8 and uint16 by @t20100 in #3604
• silx.gui.plot.PlotWidget: Added support of math syntax to text with OpenGL by @t20100 in #3600
• Fixed bootstrap.py script by @t20100 in #3613
• silx.gui.plot.PlotWidget: Fixed matplotlib backend replot failure under specific conditions by @t20100 in #3590
• silx.gui.plot: Fixed arc roi display by @t20100 in #3617
• silx.io.specfile: Fixed buffer overflow for too long motor or label by @t20100 in #3622
• Fix missing data if there is a trailing space in the mca array by @physwkim in #3612
• Update for Python 3.11 by @vasole in #3632
• Fixed running tests by @t20100 in #3637
• silx.gui.PlotWindow: Fixed management of DockWidgets when showing/hiding the PlotWindow by @t20100 in #3631
• silx.sx: Fixes compatibility with matplotlib>=3.6.0 and PySide6; Fixed continuous integration by @t20100 in #3639
• silx.gui.plot: Removed error logs for scatter triangle visualisation with aligned points by @t20100 in #3644
• silx.io.nxdata: Fixed parsing of NXcanSAS's @uncertainties by @t20100 in #3657
• silx.gui.plot.stats: Fixed warnings when all data is outside the selected stats region by @t20100 in #3659
• silx.gui.hdf5: Fixed issue with unsupported hdf5 entity (e.g. datatype) by @t20100 in #3643
• silx.gui.plot: Added snapping to profile curve; silx.gui.plot.PositionInfo: Improved picking by @t20100 in #3640
• silx.io.nxdata: Updated get_default to be more permissive and follow @default recursively by @t20100 in #3662
• silx view: Improved wildcard support in filename and data path by @t20100 in #3663
• silx.io.dictdump.dicttoh5: Added "info" logs when an entity is not copied to the output hdf5 file by @t20100 in #3664
• silx.io.nxdata: removed support of NXcanSAS signal @uncertainties by @t20100 in #3672
• Retry for generator functions by @woutdenolf in #3679
• Misc: Removed Python2 compatibilty code by @t20100 in #3673
• Build: Removed usage of numpy.distutils by @t20100 in #3649
• Build: Simplified setup.py by @t20100 in #3651
• Build: Simplified setup.py, removed support of manylinux1 by @t20100 in #3653
• Build: Removed patching compilation flags in setup.py by @t20100 in #3661
• ElideLabel: Fix API inherited from QLabel by @vallsv in #3650
• Upgrade colormap mix max selection by @payno in #3671
• silx.gui.qt: Deprecated PySide2 support by @t20100 in #3648
• Removed usage of distutils by @t20100 in #3658
• silx.math.histogram: Added support of uint16 weights for LUT histogram by @t20100 in #3670
• silx.gui.data: Do not keep aspect ratio in NXdata image views when axes @units are different by @t20100 in #3660
• silx.gui: Added support of PyQt6 by @t20100 in #3655
• Misc: Fixed development scripts compatibility with setuptools by @t20100 in #3678
• Build: Added optional use of sphinx_autodoc_typehints to generate the documentation by @t20100 in #3668
• silx view: Enabled plot grid by default for curve plots by @t20100 in #3667
• silx.gui.plot.PlotWidget: Take errorbars into account for item bounds by @t20100 in #3647
• silx.gui.data.DataViewer: Added selectionChanged signal by @t20100 in #3646
• Build: Updated windows installer; Doc: Update license documentation by @t20100 in #3642
• ArrayTableWidget editing without clearing previous data by @tifuchs in #3686
• Allow to check AA_ShareOpenGLContexts in isOpenGLAvailable by @vallsv in #3688
• Micro typo by @vallsv in #3685
• Fix FFT norm (pyfftw & numpy) by @leonroussel in #3625
• HDF5 table view bug for virtual datasets in the same file by @woutdenolf in #3572
• silx.io.dictdump: Added support of pint in dicttoh5 and dicttonx by @t20100 in #3683
• Eventless OpenCL profiling by @kif in #3690
• Rework colormap dialog by @vallsv in #3609
• silx.gui.plot.profile: Handle disconnect exception by @t20100 in #3692
• silx view: Fixed refresh for content opened as file.h5::/path by @t20100 in #3665
• silx.gui.qt: Raise exception when using PyQt5 incompatible with Python 3.10 by @t20100 in #3694
• Utility to import/export FFTW plans by @pierrepaleo in #3623
• Fixed Debian/Ubuntu packaging by @t20100 in #3693
• silx.gui.plot.PlotWidget: Fixed OpenGL rendering by @t20100 in #3695
• silx.gui.plot.StackView: Change to use default colorbar toolbutton by @t20100 in #3697
• silx.gui.plot.tools.profile: Fixed label formatting for 2D profile tool by @t20100 in #3698
• silx.gui.plot.tools.roi: Added BandROI for rotated rectangle regions of interest by @t20100 in #3680
• Updated documentation by @t20100 in #3699

New Contributors

• @leonroussel made their first contribution in #3625

Full Changelog: v1.0.0...v1.1.0rc0

1.0.0: 2021/12/06

This the first version of silx supporting PySide6 (for Qt6) and using pytest to run the tests.

• silx view:

  • Added Windows installer generation (PR #3548)
  • Updated 'About' dialog (#3547, #3475)
  • Fixed: Keep curve legend selection with changing dimensions (PR #3529)
  • Fixed: Increase max number of opened file at start-up (PR #3545)

• silx.gui:

  • Added PySide6 support (PR #3486, #3528, #3479, #3542, #3549, #3478, #3481):

  • Removed support of PyQt4 / Pyside (PR #3423, #3424, #3480, #3482)

  • silx.gui.colors:

    • Fixed duplicated logs when colormap vmin/vmax are not valid (PR #3471)

  • silx.gui.plot:

    • silx.gui.plot.actions:

      • silx.gui.plot.actions.fit:

        • Updated behaviour of fitted item auto update (PR #3532)

      • silx.gui.plot.actions.histogram:

        • Enhanced: Allow user to change histogram nbins and range (PR #3514, #3514)
        • Updated PixelIntensitiesHistoAction to use PlotWidget.selection (PR #3408)
        • Fixed issue when the whole image is masked (PR #3544)
        • Fixed error on macOS 11 with 3D display in silx view (PR #3544)

      • silx.gui.plot.CompareImages:

        • Fixed colormap: avoid forcing vmin and vmax when not in 'HORIZONTAL_LINE' or 'VERTICAL_LINE' mode (PR #3510)

      • silx.gui.plot.items:

        • Added 'image_aggregated.ImageDataAggregated': item allowing to aggregate image data before display (PR #3503)
        • Fixed ArcROI.setGeometry (fix #3492)

      • silx.gui.plot.ImageStack:

        • Enhanced management of the animation thread (PR #3440, PR #3441)

      • silx.gui.plot.ImageView:

        • Added action to show/hide the side histogram (PR #3488)
        • Added 'resetzoom' parameter to 'ImageView.setImage' (PR #3488)
        • Added empty array support to 'ImageView.setImage' (PR #3530)
        • Added aggregation mode action (PR #3536)
        • Added support of RGB and RGBA images (PR #3487)
        • Updated 'imageview' example with a '--live' option (PR #3488)
        • Fixed profile window, added setProfileWindowBehavior method (PR #3457)
        • Fixed issue with profile window size (PR #3455)

      • silx.gui.plot.PlotWidget:

        • Fixed update of Scatter item binned statistics visualization (PR #3452)
        • Fixed OpenGL backend memory leak (PR #3453)
        • Enhanced: Optimized scatter when rendered as regular grid with the OpenGL backend (PR #3447)
        • Enhanced axis limits management by the OpenGL backend (PR #3504)
        • Enhanced control of repaint (PR #3449)

    • Enhanced text label background rendering with OpenGL backend (PR #3565)

      • silx.gui.plot.PlotWindow:

        • Fixed returned action from 'getKeepDataAspectRatioAction' (PR #3500)

    • silx.gui.plot3d:

      • Fixed picking on highdpi screen (PR #3550)
      • Fixed issue in parameter tree (PR #3550)

• silx.io:

  • Added read support for FIO files (PR #3539) thanks to tifuchs contribution

  • silx.io.dictdump:

    • Fixed missing conversion of the key (PR #3505) thanks to rnwatanabe contribution
    • Extract update modes list to a constant global variable (PR #3460) thanks to jpcbertoldo

  • silx.io.convert:

    • Enhanced write_to_h5: infile parameter can now also be a HDF5 file as input (PR #3511)

  • silx.io.h5py_utils:

    • Added support of locking argument from the h5py.File when possible (PR #3554)
    • Added log a critical message for unsupported versions of libhdf5 (PR #3533)

  • silx.io.spech5:

    • Enhanced: Improve robustness (PR #3507, #3463)

  • silx.io.url:

    • Fixed is_absolute in the case the file_path() returns None (PR #3437)

  • silx.io.utils:

    • Added 'silx.io.utils.visitall': provides a visitor of all items including links that works for both commonh5 and h5py (PR #3511)

• silx.math:

  • silx.math.colormap:

    • Added apply_colormap function (PR #3525)
    • Enhanced cmap error messages (PR #3522)

• silx.opencl:

  • Added description of compute capabilities for Ampere generation GPU from Nvidia (PR #3535)
  • Added doubleword OpenCL library (PR #3466, PR #3472)

• Miscellaneous:

  • Enhanced: Setup the project to use pytest (PR #3431, #3516, #3526)
  • Enhanced: Minor test clean up (PR #3515, #3508)
  • Updated project structure: move silx sources in src/silx (PR #3412)
  • Fixed 'run_test.py --qt-binding' option (PR #3527)
  • Fixed support of numpy 1.21rc1 (PR ##3476)
  • Removed six dependency (PR #3483)

0.15.2: 2021/06/21

Minor release:

• silx.io:

  • silx.io.spech5: Enhanced robustness for missing positioner values (PR #3477)
  • silx.io.url: Fixed DataUrl.is_absolute (PR #3467)

• silx.gui:

  • Fixed naming of some loggers (PR #3477)
  • Fixed assert on ImageStack when length of urls > 0 (PR #3491)
  • silx.gui.plot: Fixed ArcROI.setGeometry (PR #3493)

• silx.opencl: Expose the double-word library and include it in tests (PR #3466)

• Misc: Fixed support of numpy 1.21rc1 (PR #3477)

0.15.1: 2021/05/17

Minor release:

• silx.gui.plot.PlotWidget: Fixed PlotWidget OpenGL backend memory leak (PR #3448)

• silx.gui.plot.ImageView:

  • Fixed profile window default behavior (PR #3458)
  • Added setProfileWindowBehavior method (PR #3458)

0.14.1: 2021/04/30

This is a bug-fix version of silx.

• silx.gui.plot: Fixed PlotWidget OpenGL backend memory leak (PR #3445)
• silx.gui.utils.glutils: Fixed isOpenGLAvailable (PR #3356)

0.15.0: 2021/03/18

Main new features are the silx.io.h5py_utils module which provides h5py concurrency helpers and image mask support by silx.gui.plot.PlotWidget's tools.

• silx view:

  • Fixed zoom reseting when scrolling a NXdata 3D stack (PR #3351)
  • Fixed support of very large 1D datasets in "Raw" table view (PR #3418)

• silx.io:

  • Added h5py_utils helper module for concurrent HDF5 reading and writing without SWMR (PR #3368, #3426)
  • Enhanced dictdump module functions regarding overwriting existing files (PR #3376)

• silx.gui:

  • Added scale to visible or selected area buttons options to silx.gui.dialog.ColormapDialog (PR #3365)

  • Fixed and enhancedsilx.gui.utils.glutils.isOpenGLAvailable (PR #3356, #3385)

  • Fixed silx.gui.widgets.FlowLayout (PR #3389)

  • Enhanced silx.gui.data.ArrayTableWidget: Added support of array clipping if data is too large (PR #3419)

  • silx.gui.plot:

    • Added mask support to Image items and use it in plot tools (histogram, profile, colormap) (PR #3369, #3381)

    • Added ImageStack methods to configure automatic reset zoom (PR #3373)

    • Added some statistic indicators in PixelIntensitiesHistoAction action (PR #3391)

    • Enhanced silx.gui.plot.ImageView integration of ROI profiles in side plots (PR #3380)

    • Enhanced PositionInfo: snapping to histogram (PR #3405) and information labels layout (PR #3399)

    • Fixed LegendSelector blinking when updated (PR #3346)

    • Fixed profile tool issue when closing profile window after attaced PlotWidget (PR #3375)

    • Fixed histogram action (PR #3396)

    • Fixed support of histogram plot items in stats module (PR #3398, #3407)

    • Fixed ColorBar when deleting attached PlotWidget (PR #3403)

    • silx.gui.plot.PlotWidget:

      • Added getValueData method to image items (PR #3378)
      • Added discardItem method (PR #3400)
      • Added unified selection() handler compatible with active item management (PR #3401)
      • Fixed addCurve documentation (PR #3371)
      • Fixed complex image first displayed mode (PR #3364)
      • Fixed curve and scatter items support of complex data input (PR #3384)
      • Fixed histogram picking (PR #3405)
      • Fixed rendering (PR #3416)

  • silx.gui.plot3d:

    • Added HeightMapData and HeightMapRGBA items (PR #3386, #3397)
    • Fixed support for RGB colored points in internal scene graph (PR #3374)
    • Fixed ImageRgba alpha channel display (PR #3414)

• silx.image:

  • Added mask support to bilinear interpolator (PR #3286)

• silx.opencl:

  • Added print statics of OpenCL kernel execution time (PR #3395)

• Miscellaneous:

  • Removed debian 9 packaging (PR #3383)
  • Enhanced test functions: silx.test.run_tests (PR #3331), silx.utils.testutils.TestLogging (PR #3393)
  • Continuous integration: Added github actions and removed travis-ci (PR #3353, #3359), fixed (PR #3361, #3366)
  • Updated documentation (PR #3383, #3387, #3409, #3416, #3427)
  • Fixed debian packaging (PR #3362)
  • Fixed silx test application on Windows (PR #3411)

0.15.0rc1

Merge pull request #3409 from t20100/prepare-0.15

self-merging to tag version