Projects Using SIMDe

The following projects are known to use SIMDe:

• Bowtie 2 — an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
• HH-SUITE ­— an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
• MMseqs2 — ultra fast and sensitive sequence search and clustering suite
• OBS Studio — free and open source software for live streaming and screen recording
• Surge — an open source digital synthesizer
• Spoa ­— c++ implementation of the partial order alignment algorithm which is used to generate consensus sequences
• pbcopper — The pbcopper library provides a suite of data structures, algorithms, and utilities for PacBio C++ applications.
• plink2 — whole-genome association analysis toolset

If you are using SIMDe, please add your project to the list.

Additionally, distro patches exist for several additional projects; see Debian's wiki for an incomplete list.