Autoformat notebooks

santisoler · santisoler · commit 63852e8440c8 · 2024-11-19T16:51:54.000-08:00
diff --git a/notebooks/03-gravity/fwd_gravity_gradiometry_3d.ipynb b/notebooks/03-gravity/fwd_gravity_gradiometry_3d.ipynb
@@ -95,7 +95,6 @@
     "\n",
     "mpl.rcParams.update({\"font.size\": 14})\n",
     "import matplotlib.pyplot as plt\n",
-    "import os\n",
     "\n",
     "save_output = False  # Optional"
    ]
diff --git a/notebooks/03-gravity/inv_gravity_anomaly_3d.ipynb b/notebooks/03-gravity/inv_gravity_anomaly_3d.ipynb
@@ -107,7 +107,6 @@
     "# Common Python functionality\n",
     "import os\n",
     "import numpy as np\n",
-    "from scipy.interpolate import griddata\n",
     "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "import tarfile\n",
diff --git a/notebooks/04-magnetics/fwd_magnetics_mvi_3d.ipynb b/notebooks/04-magnetics/fwd_magnetics_mvi_3d.ipynb
@@ -104,7 +104,6 @@
     "\n",
     "mpl.rcParams.update({\"font.size\": 14})\n",
     "import matplotlib.pyplot as plt\n",
-    "import os\n",
     "\n",
     "save_output = False  # Optional"
    ]
diff --git a/notebooks/05-dcr/fwd_dcr_2d.ipynb b/notebooks/05-dcr/fwd_dcr_2d.ipynb
@@ -90,7 +90,7 @@
     "\n",
     "# discretize functionality\n",
     "from discretize import TreeMesh\n",
-    "from discretize.utils import mkvc, refine_tree_xyz, active_from_xyz\n",
+    "from discretize.utils import active_from_xyz\n",
     "\n",
     "# Common Python functionality\n",
     "import os\n",
diff --git a/notebooks/05-dcr/fwd_dcr_3d.ipynb b/notebooks/05-dcr/fwd_dcr_3d.ipynb
@@ -86,7 +86,6 @@
     "    pseudo_locations,\n",
     "    plot_pseudosection,\n",
     "    apparent_resistivity_from_voltage,\n",
-    "    geometric_factor,\n",
     "    convert_survey_3d_to_2d_lines,\n",
     ")\n",
     "\n",
diff --git a/notebooks/05-dcr/inv_dcr_2d.ipynb b/notebooks/05-dcr/inv_dcr_2d.ipynb
@@ -91,7 +91,6 @@
     "    plot_pseudosection,\n",
     "    generate_survey_from_abmn_locations,\n",
     "    apparent_resistivity_from_voltage,\n",
-    "    geometric_factor,\n",
     ")\n",
     "from simpeg.utils.io_utils.io_utils_electromagnetics import read_dcip2d_ubc\n",
     "from simpeg.utils import download, model_builder\n",
@@ -108,15 +107,14 @@
     "\n",
     "# discretize functionality\n",
     "from discretize import TreeMesh\n",
-    "from discretize.utils import mkvc, active_from_xyz\n",
+    "from discretize.utils import active_from_xyz\n",
     "\n",
     "# Basic Python functionality\n",
     "import os\n",
     "import numpy as np\n",
     "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "from matplotlib.colors import LogNorm\n",
-    "from scipy.interpolate import LinearNDInterpolator\n",
     "import tarfile\n",
     "\n",
     "mpl.rcParams.update({\"font.size\": 14})  # default font size\n",
diff --git a/notebooks/05-dcr/inv_dcr_3d.ipynb b/notebooks/05-dcr/inv_dcr_3d.ipynb
@@ -79,14 +79,12 @@
     "from simpeg.electromagnetics.static.utils.static_utils import (\n",
     "    plot_pseudosection,\n",
     "    apparent_resistivity_from_voltage,\n",
-    "    geometric_factor,\n",
     "    convert_survey_3d_to_2d_lines,\n",
     ")\n",
     "from simpeg.utils.io_utils.io_utils_electromagnetics import read_dcip_xyz\n",
     "from simpeg.utils import download, model_builder\n",
     "from simpeg import (\n",
     "    maps,\n",
-    "    data,\n",
     "    data_misfit,\n",
     "    regularization,\n",
     "    optimization,\n",
@@ -107,7 +105,7 @@
     "\n",
     "# discretize functionality\n",
     "from discretize import TreeMesh\n",
-    "from discretize.utils import mkvc, active_from_xyz\n",
+    "from discretize.utils import active_from_xyz\n",
     "\n",
     "# Basic Python functionality\n",
     "import os\n",
diff --git a/notebooks/06-ip/fwd_ip_2d.ipynb b/notebooks/06-ip/fwd_ip_2d.ipynb
@@ -85,12 +85,11 @@
     "\n",
     "# discretize functionality\n",
     "from discretize import TreeMesh\n",
-    "from discretize.utils import mkvc, refine_tree_xyz, active_from_xyz\n",
+    "from discretize.utils import active_from_xyz\n",
     "\n",
     "# Common Python functionality\n",
     "import os\n",
     "import numpy as np\n",
-    "from scipy.interpolate import LinearNDInterpolator\n",
     "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "from matplotlib.colors import LogNorm, Normalize\n",
diff --git a/notebooks/06-ip/inv_ip_2d.ipynb b/notebooks/06-ip/inv_ip_2d.ipynb
@@ -84,15 +84,11 @@
     "from simpeg.electromagnetics.static import induced_polarization as ip\n",
     "from simpeg.electromagnetics.static.utils.static_utils import (\n",
     "    plot_pseudosection,\n",
-    "    generate_survey_from_abmn_locations,\n",
-    "    apparent_resistivity_from_voltage,\n",
-    "    geometric_factor,\n",
     ")\n",
     "from simpeg.utils.io_utils.io_utils_electromagnetics import read_dcip2d_ubc\n",
     "from simpeg.utils import download, model_builder\n",
     "from simpeg import (\n",
     "    maps,\n",
-    "    data,\n",
     "    data_misfit,\n",
     "    regularization,\n",
     "    optimization,\n",
@@ -103,15 +99,14 @@
     "\n",
     "# discretize functionality\n",
     "from discretize import TreeMesh\n",
-    "from discretize.utils import mkvc, active_from_xyz\n",
+    "from discretize.utils import active_from_xyz\n",
     "\n",
     "# Basic Python functionality\n",
     "import os\n",
     "import numpy as np\n",
     "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "from matplotlib.colors import Normalize, LogNorm\n",
-    "from scipy.interpolate import LinearNDInterpolator\n",
     "import tarfile\n",
     "\n",
     "mpl.rcParams.update({\"font.size\": 14})  # default font size\n",
diff --git a/notebooks/06-ip/inv_ip_3d.ipynb b/notebooks/06-ip/inv_ip_3d.ipynb
@@ -84,14 +84,12 @@
     "from simpeg.electromagnetics.static import induced_polarization as ip\n",
     "from simpeg.electromagnetics.static.utils.static_utils import (\n",
     "    plot_pseudosection,\n",
-    "    apparent_resistivity_from_voltage,\n",
     "    convert_survey_3d_to_2d_lines,\n",
     ")\n",
     "from simpeg.utils.io_utils.io_utils_electromagnetics import read_dcip_xyz\n",
     "from simpeg.utils import download, model_builder\n",
     "from simpeg import (\n",
     "    maps,\n",
-    "    data,\n",
     "    data_misfit,\n",
     "    regularization,\n",
     "    optimization,\n",
@@ -112,7 +110,7 @@
     "\n",
     "# discretize functionality\n",
     "from discretize import TreeMesh\n",
-    "from discretize.utils import mkvc, active_from_xyz\n",
+    "from discretize.utils import active_from_xyz\n",
     "\n",
     "# Basic Python functionality\n",
     "import os\n",
diff --git a/notebooks/08-tdem/fwd_tdem_1d.ipynb b/notebooks/08-tdem/fwd_tdem_1d.ipynb
@@ -837,6 +837,8 @@
    "source": [
     "# General waveform. This is a fully general way to define the waveform.\n",
     "# The use simply provides times and the current.\n",
+    "\n",
+    "\n",
     "def custom_waveform(t, tmax):\n",
     "    out = np.cos(0.5 * np.pi * (t - tmax) / (tmax + 0.02))\n",
     "    out[t >= tmax] = 1 + (t[t >= tmax] - tmax) / tmax\n",
diff --git a/notebooks/08-tdem/fwd_tdem_fundamentals.ipynb b/notebooks/08-tdem/fwd_tdem_fundamentals.ipynb
@@ -95,11 +95,9 @@
     "\n",
     "# discretize functionality\n",
     "from discretize import CylindricalMesh, TensorMesh\n",
-    "from discretize.utils import mkvc\n",
     "\n",
     "# Common Python functionality\n",
     "import numpy as np\n",
-    "from scipy.constants import mu_0\n",
     "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",
     "\n",
diff --git a/notebooks/08-tdem/fwd_utem_3d.ipynb b/notebooks/08-tdem/fwd_utem_3d.ipynb
@@ -88,17 +88,15 @@
     "# SimPEG functionality\n",
     "import simpeg.electromagnetics.time_domain as tdem\n",
     "from simpeg import maps\n",
-    "from simpeg.utils import plot2Ddata, model_builder\n",
+    "from simpeg.utils import plot2Ddata\n",
     "\n",
     "# discretize functionality\n",
     "from discretize import TreeMesh\n",
     "from discretize.utils import mkvc, ndgrid, active_from_xyz\n",
     "\n",
     "# Common Python functionality\n",
-    "import os\n",
     "import numpy as np\n",
-    "from scipy.constants import mu_0\n",
-    "from scipy.spatial import cKDTree, ConvexHull, Delaunay\n",
+    "from scipy.spatial import Delaunay\n",
     "from scipy.interpolate import LinearNDInterpolator\n",
     "import matplotlib as mpl\n",
     "import matplotlib.pyplot as plt\n",

Original file line number	Diff line number	Diff line change
`@@ -95,7 +95,6 @@`
`95`	`95`	`"\n",`
`96`	`96`	`"mpl.rcParams.update({\"font.size\": 14})\n",`
`97`	`97`	`"import matplotlib.pyplot as plt\n",`
`98`		`- "import os\n",`
`99`	`98`	`"\n",`
`100`	`99`	`"save_output = False # Optional"`
`101`	`100`	`]`
Original file line number	Diff line number	Diff line change
`@@ -104,7 +104,6 @@`
`104`	`104`	`"\n",`
`105`	`105`	`"mpl.rcParams.update({\"font.size\": 14})\n",`
`106`	`106`	`"import matplotlib.pyplot as plt\n",`
`107`		`- "import os\n",`
`108`	`107`	`"\n",`
`109`	`108`	`"save_output = False # Optional"`
`110`	`109`	`]`