Merge pull request #198 from singularityhub/add/mkdir-workdir

Add/mkdir workdir

Author: vsoch

CHANGELOG.md

@@ -17,6 +17,7 @@ The client here will eventually be released as "spython" (and eventually to
 singularity on pypi), and the versions here will coincide with these releases.
 
 ## [master](https://github.com/singularityhub/singularity-cli/tree/master)
+ - WORKDIR should create container for Singularity converter (0.0.12)
  - support for background process with client run (0.2.11)
  - parser bugfixes, arg from Docker not properly parsed (0.2.1)
  - version checks removed to support Singularity 3.x and above (0.2.0)

spython/client/__init__.py

@@ -8,8 +8,8 @@
 
 
 import argparse
-import sys
 import os
+import sys
 
 
 def get_parser():

spython/client/recipe.py

@@ -4,16 +4,15 @@
 # Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed
 # with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 
-from spython.main.parse.writers import get_writer
-from spython.main.parse.parsers import get_parser
+import json
+import os
+import sys
 
 from spython.logger import bot
+from spython.main.parse.parsers import get_parser
+from spython.main.parse.writers import get_writer
 from spython.utils import write_file, write_json
 
-import json
-import sys
-import os
-
 
 def main(args, options, parser):
     """This function serves as a wrapper around the DockerParser,

spython/client/shell.py

@@ -27,8 +27,7 @@ def prepare_client(image):
     """prepare a client to embed in a shell with recipe parsers and writers."""
     # The client will announce itself (backend/database) unless it's get
     from spython.main import get_client
-    from spython.main.parse import parsers
-    from spython.main.parse import writers
+    from spython.main.parse import parsers, writers
 
     client = get_client()
 

spython/image.py

@@ -6,6 +6,7 @@
 
 import hashlib
 import os
+
 from spython.logger import bot
 from spython.utils import split_uri
 

spython/instance/__init__.py

@@ -4,10 +4,11 @@
 # Mozilla Public License, v. 2.0. If a copy of the MPL was not distributed
 # with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 
-from spython.utils.fileio import read_file
-from spython.image import ImageBase
 import os
 
+from spython.image import ImageBase
+from spython.utils.fileio import read_file
+
 
 class Instance(ImageBase):
     def __init__(self, image, start=True, name=None, quiet=True, **kwargs):

spython/instance/cmd/__init__.py

@@ -13,16 +13,16 @@ def generate_instance_commands():
     """
     from spython.instance import Instance
 
+    # run_command uses run_cmd, but wraps to catch error
+    from spython.main.base.command import init_command, run_command
+    from spython.main.base.generate import RobotNamer
     from spython.main.base.logger import println
     from spython.main.instances import list_instances
     from spython.utils import run_command as run_cmd
 
-    # run_command uses run_cmd, but wraps to catch error
-    from spython.main.base.command import init_command, run_command
-    from spython.main.base.generate import RobotNamer
+    from .logs import _logs, error_logs, output_logs
     from .start import start
     from .stop import stop
-    from .logs import error_logs, output_logs, _logs
 
     Instance.RobotNamer = RobotNamer()
     Instance._init_command = init_command

spython/instance/cmd/logs.py

@@ -5,10 +5,11 @@
 # with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 
 
-from spython.utils import get_userhome, get_username
-from spython.logger import bot
-import platform
 import os
+import platform
+
+from spython.logger import bot
+from spython.utils import get_userhome, get_username
 
 
 def error_logs(self, print_logs=False):

spython/instance/cmd/start.py

@@ -39,7 +39,7 @@ def start(
     singularity [...] instance.start [...] <container path> <instance name>
 
     """
-    from spython.utils import run_command, check_install
+    from spython.utils import check_install, run_command
 
     check_install()
 

spython/logger/message.py

@@ -6,9 +6,11 @@
 
 import os
 import sys
-from .spinner import Spinner
+
 from spython.logger import decodeUtf8String
 
+from .spinner import Spinner
+
 ABORT = -5
 CRITICAL = -4
 ERROR = -3