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updating paper
Signed-off-by: Vanessa Sochat <[email protected]>
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paper/paper.md

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@@ -4,15 +4,15 @@ tags:
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- containers
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- singularity
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- linux
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- registry
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- orchestration
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authors:
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- name: Vanessa Sochat
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orcid: 0000-0002-4387-3819
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affiliation: 1
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affiliations:
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- name: Stanford University Research Computing
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index: 1
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date: 1 July 2019
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date: 24 June 2019
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bibliography: paper.bib
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---
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(called a runscript), execute a custom command, or shell into a container.
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Unlike Docker, these basic interactions simply interacted with processes in the
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foreground (e.g., running a script and exiting) and were not appropriate to run
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background services. This was a task for container instances [@SingularityInstances]
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that were developed in the years to come.
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background services. This was a task for container instances [@SingularityInstances].
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A container instance [@SingularityInstances] equates to running a container in a detached or
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daemon mode. It is a persistent version of the same container image that
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can also be isolated. Instances allow for running persistent services in the background,
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daemon mode. Instances allow for running persistent services in the background,
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and then interaction with these services from the host and other containers.
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Examples of services include databases, web servers, and associated applications
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that interact with them. For sibling container technology Docker, an early solution,
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Docker Compose was developed to allow for simple orchestration
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on a host, meaning creation of a `docker-compose.yml` file to define services,
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volumes, ports exposed, and other customizations to networking and environment
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[@DockerCompose].
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that interact with them. While a container technology can provide command line
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and other programmatic interfaces for interaction with instances, what is also needed
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is a configuration file for orchestration and customization of several instances.
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For sibling container technology Docker, Docker Compose was developed
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for this purpose. For local and production usage, the user could create a `docker-compose.yml`
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file to define services, volumes, ports exposed, and other customizations to networking and environment
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[@DockerCompose]. There was strong incentive for the development of such a tool.
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Docker Compose existed before Kubernetes was available in the middle of 2015 [@Wikipedia_contributors2019-bw].
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No equivalent orchestration tool has been created for Singularity container
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instances until now. While Singularity has empowered enterprise users to run
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services via platforms such as Kubernetes [@Meyer2019-sd], these platforms come
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with privilege. It is often the case that a production Kubernetes cluster is not
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readily available to a user via his or her institution, or that the user
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cannot pay a cloud provider to deploy one. However, this does not imply that
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a user that is not associated with an enterprise (e.g., an open source developer
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or academic) would not benefit from such an orchestration tool. This is a classic
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example of mismatched incentives. The company supporting Singularity is not
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incentivized to provide the tool, and so it is the responsibility of the open
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source community to step up.
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a non enterprise user (e.g., an open source developer
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or academic) would not benefit from such an orchestration tool. Unfortunately,
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since the current trend and strongest potential for making profits is centered
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around encouraging usage of enterprise tools like Kubernetes [@Wikipedia_contributors2019-bw],
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there is not any urgent incentive on part of the provider companies to
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invest in a non-enterprise orchestration tool. It is logical, rational, and
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understandable that companies exist to make profit, and must make profit
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to exist. As the need is unfulfilled, it is the responsibility of the open source community to step up.
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## Singularity Compose

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