Merge pull request #452 from marcodelapierre/add/some-biocontainers-18nov21

adding 3x quay.io/biocontainers: bracken fastp and kraken2

Author: vsoch

registry/quay.io/biocontainers/bracken/container.yaml

@@ -0,0 +1,15 @@
+docker: quay.io/biocontainers/bracken
+url: https://quay.io/repository/biocontainers/bracken
+maintainer: '@marcodelapierre'
+description: 'A highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.'
+latest:
+  2.6.1--py39h7cff6ad_2: sha256:7150ebf3b4efbbf3584fcdb1e4bb66bab7a030b1e8676e221757915d2278f66f
+tags:
+  2.6.1--py39h7cff6ad_2: sha256:7150ebf3b4efbbf3584fcdb1e4bb66bab7a030b1e8676e221757915d2278f66f
+aliases:
+  bracken: /usr/local/bin/bracken
+  bracken-build: /usr/local/bin/bracken-build
+  kmer2read_distr: /usr/local/bin/kmer2read_distr
+  combine_bracken_outputs.py: /usr/local/bin/combine_bracken_outputs.py
+  est_abundance.py: /usr/local/bin/est_abundance.py
+  generate_kmer_distribution.py: /usr/local/bin/generate_kmer_distribution.py

registry/quay.io/biocontainers/fastp/container.yaml

@@ -0,0 +1,11 @@
+docker: quay.io/biocontainers/fastp
+url: https://quay.io/repository/biocontainers/fastp
+maintainer: '@marcodelapierre'
+description: 'An ultra-fast all-in-one FASTQ preprocessor.'
+latest:
+  0.23.1--h79da9fb_0: sha256:12c900b998c994272699d6d0dd451fb329a0ee8be032ff0186a3ad8c315122fe
+tags:
+  0.23.1--h79da9fb_0: sha256:12c900b998c994272699d6d0dd451fb329a0ee8be032ff0186a3ad8c315122fe
+  0.22.0--h2e03b76_0: sha256:e94097ae4ca17394b35d59a20d9a9f6d8972992bd47d1783f00c26e86ca82c2b
+aliases:
+  fastp: /usr/local/bin/fastp

registry/quay.io/biocontainers/kraken2/container.yaml

@@ -0,0 +1,13 @@
+docker: quay.io/biocontainers/kraken2
+url: https://quay.io/repository/biocontainers/kraken2
+maintainer: '@marcodelapierre'
+description: 'A taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds.'
+latest:
+  2.1.2--pl5262h7d875b9_0: sha256:3ce3592fb5d85d96ca1f9872bb407f1d939cf7e8758e47c4df841f075f094557
+tags:
+  2.1.2--pl5262h7d875b9_0: sha256:3ce3592fb5d85d96ca1f9872bb407f1d939cf7e8758e47c4df841f075f094557
+  2.1.1--pl5262h7d875b9_1: sha256:f61773d6ed01cbe6b0dee06c61bd23ec108fa8a33cc5ffbed4b863ccaa566b61
+aliases:
+  kraken2: /usr/local/bin/kraken2
+  kraken2-build: /usr/local/bin/kraken2-build
+  kraken2-inspect: /usr/local/bin/kraken2-inspect