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workflow version updates (#608)
* workflow version updates (wip) Signed-off-by: vsoch <[email protected]>
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‎.github/workflows/alert-action-updates.yaml‎

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name: Check Actions Once a Year
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on:
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schedule:
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cron: 0 0 1 6 *
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jobs:
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test-detect:
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name: Update Actions
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runs-on: ubuntu-latest
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steps:
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- name: Checkout Repository
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uses: actions/checkout@v3
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- name: Detect and Update
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uses: vsoch/action-updater@2c2216e27ee963aaa31ff0ff81de007acb84b9c2 # 0.0.11
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with:
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token: ${{ secrets.GITHUB_TOKEN }}

‎.github/workflows/docs.yml‎

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generate-docs:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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with:
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ref: "gh-pages"
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- uses: actions/checkout@v3
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with:
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ref: gh-pages
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- name: Create conda environment
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run: conda create --quiet -c conda-forge --name shpc spython
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- name: Create conda environment
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run: conda create --quiet -c conda-forge --name shpc spython
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- name: Install shpc
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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root=$PWD
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source activate shpc
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cd /tmp
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git clone https://github.com/singularityhub/singularity-hpc
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cd singularity-hpc
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pip install -e .
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cd $root
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- name: Install shpc
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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root=$PWD
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source activate shpc
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cd /tmp
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git clone https://github.com/singularityhub/singularity-hpc
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cd singularity-hpc
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pip install -e .
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cd $root
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- name: Generate docs
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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source activate shpc
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/bin/bash generate.sh
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- name: Generate docs
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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source activate shpc
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/bin/bash generate.sh
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- name: Deploy 🚀
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uses: JamesIves/github-pages-deploy-action@4.1.1
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with:
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branch: gh-pages
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folder: .
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- name: Deploy 🚀
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uses: JamesIves/github-pages-deploy-action@ba1486788b0490a235422264426c45848eac35c6 # v4.4.1
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with:
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branch: gh-pages
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folder: .

‎.github/workflows/main.yml‎

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# This should run on a push to any branch except main, gh-pages, and binoc
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push:
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branches-ignore:
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- main
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- gh-pages
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- main
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- gh-pages
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jobs:
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formatting:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v3
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- name: Setup black linter
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run: conda create --quiet --name black pyflakes
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- name: Setup black linter
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run: conda create --quiet --name black pyflakes
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- name: Check Spelling
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uses: crate-ci/typos@592b36d23c62cb378f6097a292bc902ee73f93ef # version 1.0.4
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with:
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files: ./docs/getting_started/ ./docs/index.rst
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- name: Check Spelling
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uses: crate-ci/typos@7ad296c72fa8265059cc03d1eda562fbdfcd6df2 # v1.9.0
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with:
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files: ./docs/getting_started/ ./docs/index.rst
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- name: Lint and format Python code
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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source activate black
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pip install -r .github/dev-requirements.txt
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pre-commit run --all-files
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- name: Lint and format Python code
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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source activate black
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pip install -r .github/dev-requirements.txt
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pre-commit run --all-files

‎.github/workflows/release.yaml‎

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runs-on: ubuntu-20.04
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v3
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- name: Install
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run: conda create --quiet --name shpc twine

‎.github/workflows/test-container.yml‎

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outputs:
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changed_recipes: ${{ steps.files.outputs.added_modified }}
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steps:
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- name: Find changed recipes
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id: files
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uses: jitterbit/get-changed-files@b17fbb00bdc0c0f63fcf166580804b4d2cdc2a42
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with:
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format: 'json'
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- name: Find changed recipes
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id: files
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uses: jitterbit/get-changed-files@b17fbb00bdc0c0f63fcf166580804b4d2cdc2a42
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with:
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format: json
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test-recipes:
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needs:
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- changes
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- changes
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runs-on: ubuntu-latest
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strategy:
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# Keep going on other deployments if anything bloops
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name: Check ${{ matrix.changed_recipe }}
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steps:
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- name: Continue
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run: |
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# Continue if we have a changed recipe file
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if [[ "${{ matrix.changed_recipe }}" = registry* ]]; then
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recipe_basename=$(basename "${{ matrix.changed_recipe }}")
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if [[ "${recipe_basename}" == "container.yaml" ]]; then
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echo "keepgoing=true" >> $GITHUB_ENV
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fi
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- name: Continue
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run: |
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# Continue if we have a changed recipe file
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if [[ "${{ matrix.changed_recipe }}" = registry* ]]; then
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recipe_basename=$(basename "${{ matrix.changed_recipe }}")
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if [[ "${recipe_basename}" == "container.yaml" ]]; then
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echo "keepgoing=true" >> $GITHUB_ENV
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fi
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fi
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- name: Checkout
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if: ${{ env.keepgoing == 'true' }}
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uses: actions/checkout@v3
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- name: Checkout
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if: ${{ env.keepgoing == 'true' }}
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uses: actions/checkout@v3
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- name: Make Space For Build
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if: ${{ env.keepgoing == 'true' }}
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run: |
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sudo rm -rf /usr/share/dotnet
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sudo rm -rf /opt/ghc
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- name: Make Space For Build
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if: ${{ env.keepgoing == 'true' }}
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run: |
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sudo rm -rf /usr/share/dotnet
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sudo rm -rf /opt/ghc
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- name: Install Dependencies
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if: ${{ env.keepgoing == 'true' }}
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run: |
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sudo apt-get install lua5.2 liblua5.2-dev lua-filesystem lua-posix tcl tcl-dev
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- name: Install Dependencies
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if: ${{ env.keepgoing == 'true' }}
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run: |
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sudo apt-get install lua5.2 liblua5.2-dev lua-filesystem lua-posix tcl tcl-dev
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- name: Install Lmod
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if: ${{ env.keepgoing == 'true' }}
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run: |
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PKG_VERSION=8.4.27
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PKG_URL="https://github.com/TACC/Lmod/archive/${PKG_VERSION}.tar.gz"
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wget $PKG_URL
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tar xfz ${PKG_VERSION}.tar.gz
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cd Lmod-${PKG_VERSION}
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./configure --prefix=/usr/share && make && make install
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- name: Install Lmod
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if: ${{ env.keepgoing == 'true' }}
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run: |
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PKG_VERSION=8.4.27
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PKG_URL="https://github.com/TACC/Lmod/archive/${PKG_VERSION}.tar.gz"
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wget $PKG_URL
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tar xfz ${PKG_VERSION}.tar.gz
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cd Lmod-${PKG_VERSION}
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./configure --prefix=/usr/share && make && make install
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- uses: eWaterCycle/setup-singularity@v6
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if: ${{ env.keepgoing == 'true' }}
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name: Install Singularity
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with:
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singularity-version: 3.6.4
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- uses: eWaterCycle/setup-singularity@v6
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if: ${{ env.keepgoing == 'true' }}
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name: Install Singularity
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with:
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singularity-version: 3.6.4
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- name: Create conda environment
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if: ${{ env.keepgoing == 'true' }}
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run: conda create --quiet -c conda-forge --name shpc spython
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- name: Create conda environment
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if: ${{ env.keepgoing == 'true' }}
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run: conda create --quiet -c conda-forge --name shpc spython
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- uses: actions/checkout@v2
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if: ${{ env.keepgoing == 'true' }}
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- uses: actions/checkout@v3
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if: ${{ env.keepgoing == 'true' }}
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- name: Install shpc
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if: ${{ env.keepgoing == 'true' }}
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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source activate shpc
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pip install -e .
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- name: Install shpc
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if: ${{ env.keepgoing == 'true' }}
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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source activate shpc
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pip install -e .
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- name: Run module tests
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if: ${{ env.keepgoing == 'true' }}
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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source activate shpc
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cd registry
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container_yaml="${{ matrix.changed_recipe }}"
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module=$(dirname $container_yaml)
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module=$(echo "${module/registry\//}")
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echo "Testing $module"
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shpc test --template ../shpc/tests/test-registry-module.sh --commands $module
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- name: Run module tests
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if: ${{ env.keepgoing == 'true' }}
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run: |
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export PATH="/usr/share/miniconda/bin:$PATH"
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source activate shpc
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cd registry
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container_yaml="${{ matrix.changed_recipe }}"
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module=$(dirname $container_yaml)
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module=$(echo "${module/registry\//}")
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echo "Testing $module"
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shpc test --template ../shpc/tests/test-registry-module.sh --commands $module

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