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SarahBeecroftvsoch
SarahBeecroft
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vsoch
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Adding new registry recipes (#417)
* Adding new registry recipes On branch registryupdate Changes to be committed: new file: canu.yml new file: clustalo.yml new file: cutadapt.yml new file: diamond.yml new file: fastqc.yml new file: gatk4.yml new file: maker.yml new file: mrbayes.yml new file: mummer.yml * Rename canu.yml to quay.io/biocontainers/can/container.yaml * Rename clustalo.yml to quay.io/biocontainers/clustalo.yaml * Rename quay.io/biocontainers/can/container.yaml to registry/quay.io/biocontainers/canu/container.yaml * Update and rename quay.io/biocontainers/clustalo.yaml to registry/quay.io/biocontainers/clustalo/container.yaml * Rename cutadapt.yml to registry/quay.io/biocontainers/cut adapt/container.yaml * Rename diamond.yml to registry/quay.io/biocontainers/diamond/container.yaml * Rename fastqc.yml to registry/quay.io/biocontainers/fastqc/container.yaml * Rename gatk4.yml to registry/quay.io/biocontainers/gatk4/container.yaml * Rename maker.yml to registry/quay.io/biocontainers/maker/container.yaml * Rename mrbayes.yml to registry/quay.io/biocontainers/mrbayes/container.yml * Rename mummer.yml to registry/quay.io/biocontainers/mummer/container.yaml * Update and rename registry/quay.io/biocontainers/cut adapt/container.yaml to registry/quay.io/biocontainers/cutadapt/container.yaml * Update and rename container.yml to container.yaml * Update registry/quay.io/biocontainers/mummer/container.yaml Co-authored-by: Vanessasaurus <[email protected]> Co-authored-by: Vanessasaurus <[email protected]>
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‎registry/quay.io/biocontainers/canu/container.yaml‎

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docker: quay.io/biocontainers/canu
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latest:
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"2.1.1--h1b792b2_2":
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"sha256:b48b52afc355477015ef60bebded3b4ab3d3099bbf5698879de8eb600c9ff1a4"
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tags:
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"2.1.1--he1b5a44_1":
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"sha256:a28f4d1b2289d7f42e47efc0d35ad76ab28cc43a40d2b32aa857eda9c428718d"
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maintainer: "@sarahbeecroft"
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description: "Canu is a fork of the celera assembler designed for high-noise single-molecule sequencing"
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url: https://quay.io/repository/biocontainers/canu
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aliases:
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canu: /usr/local/bin/canu

‎registry/quay.io/biocontainers/clustalo/container.yaml‎

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docker: quay.io/biocontainers/clustalo
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latest:
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"1.2.4--h1b792b2_4":
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"sha256:5c2d9d0ab6b459078bec701d44daffbdb31f4e87c8382b0ed07da24d46ee39af"
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tags:
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"1.2.4--he1b5a44_3":
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"sha256:6703d1623f640ddf7212d7541eea083e2327988c28b7952efc8f6cbe5bf785d1"
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maintainer: "@sarahbeecroft"
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description: "Multiple sequence alignment program for aligning 3+ sequences together"
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url: https://quay.io/repository/biocontainers/clustalo
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aliases:
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clustalo: /usr/local/bin/clustalo

‎registry/quay.io/biocontainers/cutadapt/container.yaml‎

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docker: quay.io/biocontainers/cutadapt
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latest:
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"3.4--py37h73a75cf_1":
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"sha256:12e96e635cf387b7969a2cfefadfe79d893bb3ad33cb03dc500451900111a6dc"
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tags:
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"3.4--py38h4a8c8d9_1":
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"sha256:489eda33229f60e7ca8e0397f95c775d53d6f40fa0baed04386e3726d4e9e136"
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maintainer: "@sarahbeecroft"
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description: "Trim adapters from high-throughput sequencing reads"
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url: https://quay.io/repository/biocontainers/cutadapt
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aliases:
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cutadapt: /usr/local/bin/cutadapt

‎registry/quay.io/biocontainers/diamond/container.yaml‎

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docker: quay.io/biocontainers/diamond
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latest:
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"2.0.9--hdcc8f71_0":
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"sha256:3e6ab3300dbbad7d86a0827813cc840d5454e762f10c325c3e28b61b0c2bfc72"
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tags:
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"0.8.26--h2e03b76_4":
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"sha256:1bdf8de97dfdfb795a14cecf22cc7b249801ac9886e187533c3b1cf3c9cb7613"
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maintainer: "@sarahbeecroft"
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description: "Accelerated blast compatible local sequence aligner"
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url: https://quay.io/repository/biocontainers/diamond
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aliases:
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diamond: /usr/local/bin/diamond

‎registry/quay.io/biocontainers/fastqc/container.yaml‎

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docker: quay.io/biocontainers/fastqc
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latest:
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"0.11.9--hdfd78af_1":
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"sha256:0c60406af11b0723339df05b10a592aa3f8c9a4d2ec8f213cbe11051e7264a25"
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tags:
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"0.11.7--hdfd78af_7":
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"sha256:cd90a6413e43865cacfa9e2217169d0acd38f3f6d6bee621cc7eac6f68cae823"
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maintainer: "@sarahbeecroft"
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description: "A quality control tool for high throughput sequence data"
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url: https://quay.io/repository/biocontainers/fastqc
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aliases:
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fastqc: /usr/local/bin/fastqc

‎registry/quay.io/biocontainers/gatk4/container.yaml‎

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docker: quay.io/biocontainers/gatk4
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latest:
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"4.2.0.0--hdfd78af_1":
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"sha256:9d65f14f0fc4637d582be624d173e94baddcfa4abe1bdecc609dcc69c62407f0"
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tags:
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"4.1.9.0--py39_0":
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"sha256:7b0b112b595861b140cbebdec5a0534bea9c40ef8bea4b3927fcea7ec53f5f57"
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description: "An open source toolkit frequently used by most genomic research and clinical analyses"
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maintainer: "@sarahbeecroft"
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url: https://quay.io/repository/biocontainers/gatk4
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aliases:
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gatk: /usr/local/bin/gatk

‎registry/quay.io/biocontainers/maker/container.yaml‎

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docker: quay.io/biocontainers/maker
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latest:
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"3.01.03--pl5262h8f1cd36_1":
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"sha256:1a588e177ae87eee1bf54edebe245b41ef2fbd7f0261762398c3b62883bbcd60"
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tags:
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"2.31.11--pl526h61907ee_0":
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"sha256:b9bd2979ddc5f74effd67c03d56a7f4f2640b36e242c54e2337ade9c5b6dca98"
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description: "A portable and easily configurable genome annotation pipeline"
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maintainer: "@sarahbeecroft"
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url: https://quay.io/repository/biocontainers/maker
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aliases:
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maker: /usr/local/bin/maker

‎registry/quay.io/biocontainers/mrbayes/container.yaml‎

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docker: quay.io/biocontainers/mrbayes
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latest:
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"3.2.6--0":
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"sha256:a81b94e4659014c25c5840b01f1f5ba5b635d2ce061134e2911f55f974c49b3f"
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tags:
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"3.2.6--0":
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"sha256:a81b94e4659014c25c5840b01f1f5ba5b635d2ce061134e2911f55f974c49b3f"
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"3.2.7--h19cf415_2":
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"sha256:893140dd1c0019013652f77f379641cadf1c43d7d96b9cef35cf8d1475f25991"
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description: "A program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models"
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maintainer: "@sarahbeecroft"
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url: https://quay.io/repository/biocontainers/mrbayes
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aliases:
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mb: /usr/local/bin/mb

‎registry/quay.io/biocontainers/mummer/container.yaml‎

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docker: quay.io/biocontainers/mummer
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latest:
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"3.23--pl5262h1b792b2_12":
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"sha256:fededb4e6f2e5b5df4d76f7403fe4f4df46931834a02a0e13dde4e6451b21dc6"
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tags:
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"3.23--pl526he1b5a44_11":
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"sha256:2a0b6a706b92f2507d033bef6d3e4fe6bca2104f44e870447b414cfa34e67c38"
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description: "MUMmer is a system for rapidly aligning entire genomes in complete or in draft form."
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maintainer: "@sarahbeecroft"
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url: https://quay.io/repository/biocontainers/mummer
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aliases:
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mummer: /usr/local/bin/mummer

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