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added quay.io/biocontainers tools (#409)
* added quay.io/biocontainers tools * Update registry/quay.io/biocontainers/spades/container.yaml Co-authored-by: Vanessasaurus <[email protected]> Co-authored-by: audreystott <[email protected]>
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‎registry/quay.io/biocontainers/sambamba/container.yaml‎

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docker: quay.io/biocontainers/sambamba
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latest:
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"0.8.0": "sha256:ae92faef4c53a632b2120dfffa7b6dcfe5366a0647e61bbbd6188aedc89da4e8"
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tags:
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"0.8.0": "sha256:ae92faef4c53a632b2120dfffa7b6dcfe5366a0647e61bbbd6188aedc89da4e8"
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"0.7.1": "sha256:9ec72d3d0991c4209830e4ff17937986808c64c430780071559e7072e8317ab3"
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"0.6.9": "sha256:b7852eccc079fff9e1ff6c4fb6e59883624373e2489588174da9f99db83b431b"
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maintainer: "@audreystott"
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description: "Sambamba is a high performance highly parallel robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files."
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url: https://quay.io/repository/biocontainers/sambamba
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aliases:
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sambamba: /usr/local/bin/sambamba

‎registry/quay.io/biocontainers/samtools/container.yaml‎

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docker: quay.io/biocontainers/samtools
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latest:
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"1.12": "sha256:5fd5f0937adf8a24b5bf7655110e501df78ae51588547c8617f17c3291a723e1"
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tags:
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"1.12": "sha256:5fd5f0937adf8a24b5bf7655110e501df78ae51588547c8617f17c3291a723e1"
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"1.11": "sha256:141120f19f849b79e05ae2fac981383988445c373b8b5db7f3dd221179af382b"
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"1.10": "sha256:84a8d0c0acec87448a47cefa60c4f4a545887239fcd7984a58b48e7a6ac86390"
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maintainer: "@audreystott"
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description: "Tools for reading/writing/editing/indexing/viewing SAM/BAM/CRAM format."
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url: https://quay.io/repository/biocontainers/samtools
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aliases:
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samtools: /usr/local/bin/samtools

‎registry/quay.io/biocontainers/spades/container.yaml‎

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docker: quay.io/biocontainers/spades
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latest:
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"3.15.2": "sha256:250657af71d37fafdff81af644e92bf84485d4d9b6894f58ff84efdc1a6ec9eb"
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tags:
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"3.15.2": "sha256:250657af71d37fafdff81af644e92bf84485d4d9b6894f58ff84efdc1a6ec9eb"
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"3.15.0": "sha256:4cc7e41f53d3effb25b59afedc3fbd2d3e08fff449a507ecfa6731ff6d81ff79"
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maintainer: "@audreystott"
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description: "SPAdes – St. Petersburg genome assembler – is an assembly toolkit containing various assembly pipelines."
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url: https://quay.io/repository/biocontainers/spades
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aliases:
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spades.py: /usr/local/bin/spades.py

‎registry/quay.io/biocontainers/star/container.yaml‎

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docker: quay.io/biocontainers/star
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latest:
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"2.7.9a": "sha256:d80ae2e0354e890d55ad0009e9ad9667d1113a679659071e6e02d50e46c8bba1"
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tags:
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"2.7.9a": "sha256:d80ae2e0354e890d55ad0009e9ad9667d1113a679659071e6e02d50e46c8bba1"
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"2.7.8a": "sha256:b30f079606cb90aa8c4c8ebf96f4e7988e8e4c475bb842d75a76311b3d39cacd"
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maintainer: "@audreystott"
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description: "Spliced Transcripts Alignment to a Reference."
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url: https://quay.io/repository/biocontainers/star
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aliases:
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STAR: /usr/local/bin/STAR

‎registry/quay.io/biocontainers/trimmomatic/container.yaml‎

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docker: quay.io/biocontainers/trimmomatic
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latest:
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"v0.39": "sha256:b52e7e3159fda36b7b5c119a9a1e673e6a63e480eff8617b689c031f76998870"
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tags:
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"v0.39": "sha256:b52e7e3159fda36b7b5c119a9a1e673e6a63e480eff8617b689c031f76998870"
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filter:
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- "v*"
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maintainer: "@audreystott"
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description: "A flexible read trimming tool for Illumina NGS data."
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url: https://quay.io/repository/biocontainers/trimmomatic
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aliases:
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trimmomatic: /usr/local/bin/trimmomatic

‎registry/quay.io/biocontainers/trinity/container.yaml‎

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docker: quay.io/biocontainers/trinity
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latest:
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"2.12.0": "sha256:2736617a96c30bce93a149fe5f47b4f4a290a7d21c1503619430db619d9bc3a0"
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tags:
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"2.12.0": "sha256:2736617a96c30bce93a149fe5f47b4f4a290a7d21c1503619430db619d9bc3a0"
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"2.11.0": "sha256:6d35d716aa12ba7b0c715fa8a30359b43ba9151e854dc4407b949e7b57c3a50a"
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maintainer: "@audreystott"
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description: "Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data."
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url: https://quay.io/repository/biocontainers/trinity
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aliases:
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trinity: /usr/local/bin/Trinity
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Trinity: /usr/local/bin/Trinity

‎registry/quay.io/biocontainers/vcftools/container.yaml‎

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docker: quay.io/biocontainers/vcftools
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latest:
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"0.1.16": "sha256:91fac9c61535846675356d0d79abb9b9f8ecd0fb8b46411feaa891e652c8d51e"
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tags:
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"0.1.16": "sha256:91fac9c61535846675356d0d79abb9b9f8ecd0fb8b46411feaa891e652c8d51e"
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"0.1.15": "sha256:8af7cefca50bfdcf184f8a4faff336ae436e04f7a16dcd9b18fa0687b0ae975e"
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maintainer: "@audreystott"
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description: "A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project."
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url: https://quay.io/repository/biocontainers/vcftools
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aliases:
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vcftools: /usr/local/bin/vcftools

‎registry/quay.io/biocontainers/velvet/container.yaml‎

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docker: quay.io/biocontainers/velvet
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latest:
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"1.2.10": "sha256:7fc2606a1431883dcd0acf830abcfeddb975677733d110a085da0f07782f5a27"
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tags:
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"1.2.10": "sha256:7fc2606a1431883dcd0acf830abcfeddb975677733d110a085da0f07782f5a27"
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maintainer: "@audreystott"
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description: "Short read de novo assembler using de Bruijn graphs"
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url: https://quay.io/repository/biocontainers/velvet
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aliases:
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velveth: /usr/local/bin/velveth
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velvetg: /usr/local/bin/velvetg

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