add builder default annotations where needed and fix some other obvious build warning.

Author: Markus Fleischauer

chemical_db_oss/src/main/java/de/unijena/bioinf/spectraldb/entities/Ms2ReferenceSpectrum.java

@@ -70,6 +70,7 @@ public class Ms2ReferenceSpectrum implements ReferenceSpectrum {
      */
     private double exactMass;
 
+    @Builder.Default
     private int msLevel = 0;
 
     /**

fragmentation_tree/fragmentation_tree_construction/src/main/java/de/unijena/bioinf/FragmentationTreeConstruction/computation/recalibration/MedianSlope.java

@@ -97,7 +97,7 @@ public double[][] getMedianSubsetFairDistributed(final Spectrum<Peak> measured,
             Collections.sort(chosenPeaks[k], new Comparator<Integer>() {
                 @Override
                 public int compare(Integer o1, Integer o2) {
-                    return new Double(measured.getIntensityAt(o2)).compareTo(measured.getIntensityAt(o1));
+                    return Double.compare(measured.getIntensityAt(o2), measured.getIntensityAt(o1));
                 }
             });
         }

lcms2/src/main/java/de/unijena/bioinf/lcms/statistics/SampleStats.java

@@ -50,6 +50,7 @@ public float ms2NoiseLevel() {
         return ms2NoiseLevel;
     }
 
+    @Builder.Default
     private double expectedPeakWidth = -1;
 
     public Optional<Double> getExpectedPeakWidth() {

sirius_gui/src/main/java/de/unijena/bioinf/ms/gui/utils/loading/SiriusCardLayout.java

@@ -179,10 +179,6 @@ public void addLayoutComponent(Component comp, Object constraints) {
         }
     }
 
-    /**
-     * @deprecated   replaced by
-     *      {@code addLayoutComponent(Component, Object)}.
-     */
     public void addLayoutComponent(String name, Component comp) {
         synchronized (comp.getTreeLock()) {
             if (!vector.isEmpty()) {

sirius_rest_service/src/main/java/de/unijena/bioinf/ms/middleware/service/projects/Project.java

@@ -88,7 +88,6 @@ default Compound findCompoundById(String compoundId, Compound.OptField... optFie
                 EnumSet.of(AlignedFeature.OptField.topAnnotations));
     }
 
-    @SneakyThrows
     Compound findCompoundById(String compoundId, boolean msDataSearchPrepared, @NotNull EnumSet<Compound.OptField> optFields, @NotNull EnumSet<AlignedFeature.OptField> optFeatureFields);
 
     void deleteCompoundById(String compoundId);