Understand the R object create with read_homer_output

[El-Castor]

Hi,

First of all thanks for this Homer implementation, it's a great work. I was wondering the differences between the two table called :

• known motifs Peaks
• known motifs table

I means that I don't understand the differences between the "best_guest" of the known motifs peaks and the "motif_name" of the known motifs table? Can you explain me this two different output?
If I'm not clear, don't hesitate to ask me more information.

Thanks In advance.

[slowkow]

Sorry, I don't think I understand. Maybe an example would help?

The HOMER documentation is probably the best place to look for more information on this.