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Revert "Revert "adding exclude files + other changes to get registration to work for me"" (#2081)
* Revert "Revert "adding exclude files + other changes to get registration to w…" This reverts commit a8cb085. * fix stripping of folder prefixes, use latest chainlink-protos SHA
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- Bring back topological sorting of proto dependencies for the local-cre
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- Bring back support for exclude files to proto registration config

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