Commit 3cdb089
committed
Updating smithlab_cpp submodule
1 parent 7f637ea commit 3cdb089
1 file changed
+1
-1
lines changedSubmodule smithlab_cpp updated 32 files
- .clang-format+5
- .github/workflows/source-format-check.yml+20
- GenomicRegion.cpp+106-140
- GenomicRegion.hpp+141-150
- Makefile-54
- Makefile.am+5-2
- MappedRead.cpp+7-7
- MappedRead.hpp+2-4
- OptionParser.cpp+163-172
- OptionParser.hpp+35-41
- QualityScore.cpp+9-10
- QualityScore.hpp+49-87
- autogen.sh+37
- bisulfite_utils.cpp+3-4
- bisulfite_utils.hpp+13-19
- chromosome_utils.cpp+61-68
- chromosome_utils.hpp+29-44
- cigar_utils.cpp+6-8
- cigar_utils.hpp+49-89
- configure.ac+1
- dna_four_bit.cpp+2
- dna_four_bit.hpp+22-32
- htslib_wrapper.cpp+7-13
- htslib_wrapper.hpp+3-3
- sam_record.cpp+26-43
- sam_record.hpp+58-84
- smithlab_os.cpp+90-120
- smithlab_os.hpp+52-79
- smithlab_utils.cpp+49-47
- smithlab_utils.hpp+247-209
- zlib_wrapper.cpp+5-10
- zlib_wrapper.hpp+18-23
0 commit comments