Merge pull request #97 from smithlabcode/adding-workflows

Updating workflows

Author: andrewdavidsmith

.github/workflows/macos-builds.yml

@@ -0,0 +1,26 @@
+name: DNMTools builds on macOS
+
+on:
+  workflow_dispatch:
+
+jobs:
+  build:
+
+    runs-on: macos-13
+
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        submodules: recursive
+    - name: Update Homebrew
+      run: brew update
+    - name: Install autotools
+      run: brew install autoconf automake libtool
+    - name: Install dependencies
+      run: brew install htslib gsl
+    - name: Generate configure script
+      run: ./autogen.sh
+    - name: configure with g++-12
+      run: ./configure CXX="g++-12" CPPFLAGS="-I$(brew --prefix)/include" LDFLAGS="-L$(brew --prefix)/lib"
+    - name: make
+      run: make

.github/workflows/ubuntu-builds.yml

@@ -0,0 +1,30 @@
+name: DNMTools builds on Ubuntu
+
+on:
+  workflow_dispatch:
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        submodules: recursive
+    - name: Install dependencies
+      run: sudo apt-get install -y libhts-dev libgsl-dev samtools
+    - name: Generate configure script
+      run: ./autogen.sh
+    - name: configure
+      run: ./configure
+    - name: make with g++
+      run: make CXX="g++"
+    - name: cleanup after g++
+      run: make clean
+    - name: install clang dependencies
+      run: sudo apt-get install -y libomp-dev
+    - name: make with clang++
+      run: make CXX="clang++" CXXFLAGS="-fopenmp=libomp"
+    - name: cleanup after clang++
+      run: make clean

.github/workflows/c-cpp.yml .github/workflows/ubuntu-distcheck.yml.github/workflows/c-cpp.yml renamed to .github/workflows/ubuntu-distcheck.yml

@@ -1,4 +1,4 @@
-name: C/C++ CI
+name: DNMTools distribution check on Ubuntu
 
 on:
   workflow_dispatch:
@@ -18,17 +18,11 @@ jobs:
         submodules: recursive
     - name: Update packages
       run: sudo apt-get update
-    - name: Install autotools
-      run: sudo apt-get install -y autoconf automake libtool
     - name: Install dependencies
       run: sudo apt-get install -y libhts-dev libgsl-dev samtools
     - name: Generate configure script
-      run: autoreconf -i src/abismal/src/smithlab_cpp src/abismal src/smithlab_cpp .
+      run: ./autogen.sh
     - name: configure
       run: ./configure
-    - name: make
-      run: make
-    - name: make check
-      run: make check
     - name: make distcheck
       run: make distcheck