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lines changed Original file line number Diff line number Diff line change @@ -25,10 +25,10 @@ More documentation will come as this tool evolves, but for now:
2525 the number of reads because probabilities on modifications are used, so
2626 methylation levels for each site are expected values (the best estimates we
2727 can make), and do not use arbitrary cutoffs.
28- - Other commands in DNMTools have been modified to use this form of expected
29- methylation level, and behave as previously for bisulfite sequencing data,
30- but have updated behavior when the data is from nanopore. The user does not
31- need to specify the technology used.
28+ - Several other commands in DNMTools have been modified to use this form of
29+ expected methylation level, and behave as previously for bisulfite
30+ sequencing data, but have updated behavior when the data is from
31+ nanopore. The user does not need to specify the technology used.
3232- Some commands need to use a ` -relaxed ` flag to work with the additional
3333 columns in the output from ` counts-nano ` compared with ` counts ` . For
3434 commands without this option, simply do ` cut -f1-6 ` on the output of
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