Merge pull request #131 from smithlabcode/roi-improvements

Author: andrewdavidsmith

data/md5sum.txt

@@ -10,13 +10,13 @@ ae05a28de5643a512386e767b3aa963a  tests/araTha1_simulated.hypermr
 6de21c61705040072be76cddae481cfa  tests/reads.fmt.srt.sam
 1cf51932cef739544b91a41bdfdb8841  tests/reads.fmt.srt.uniq.sam
 103225f9a3adc45836e366551989909b  tests/reads.hmr
-3cbec246887d1837f004e4643148f7e6  tests/reads.levels
+94b49aa7f7b0bc950541cb2fddfc44e4  tests/reads.levels
 3bf209c27c99134386ea63756ff9fe2c  tests/reads.mstats
 7a02c7d93111403a4619ccc74aa3c78e  tests/reads.sam
 b067a733102e611ca614ae22fc944471  tests/reads.ustats
 8e5ad0faefe241de9c2c5748e005e2e8  tests/simreads_1.fq
 4ebacfec717182fafce46b037591b228  tests/simreads_2.fq
 3ba5a1c4c420ca7a2dbd88290033c3bc  tests/tRex1.idx
-b5270bb38d798741cfa74f411a0d49bf  tests/tRex1_promoters.roi.bed
+dd7e42f50d271630d735b1cfa5036cfa  tests/tRex1_promoters.roi.bed
 e7e9590475a7f9b1ae41701d81892e57  tests/two_epialleles.amr
 ec6a686617cad31e9f7a37a3d378e6ed  tests/two_epialleles.states

src/analysis/metagene.cpp

@@ -209,14 +209,14 @@ metagene(int argc, const char **argv) {
 
     if (verbose)
       cerr << "output columns:\n"
-           << LevelsCounter::tostring_as_row_header() << endl;
+           << LevelsCounter::format_header() << endl;
 
     std::ofstream of;
     if (!outfile.empty()) of.open(outfile);
     std::ostream out(of.is_open() ? of.rdbuf() : std::cout.rdbuf());
 
     for (auto i = 0u; i < levels.size(); ++i)
-      out << i * bin_size << '\t' << levels[i].tostring_as_row() << endl;
+      out << i * bin_size << '\t' << levels[i].format_row() << endl;
   }
   catch (std::exception &e) {
     cerr << e.what() << endl;