mlml tests: Adding the test script to the list of tests scripts and to the files for installation and adding the mlml test output to the files for cleaning

Author: andrewdavidsmith

Makefile.am

@@ -66,6 +66,7 @@ EXTRA_DIST = \
              data/radmeth_test_design.txt \
              data/two_epialleles.states \
              data/araTha1_simulated.counts.gz \
+             data/mlml_test_data.tgz \
              test_scripts/test_abismalidx.test \
              test_scripts/test_simreads.test \
              test_scripts/test_abismal.test \
@@ -82,7 +83,8 @@ EXTRA_DIST = \
              test_scripts/test_states.test \
              test_scripts/test_amrfinder.test \
              test_scripts/test_hypermr.test \
-             test_scripts/test_diff.test
+             test_scripts/test_diff.test \
+             test_scripts/test_mlml.test
 
 ### ADS: the file md5sum.txt can be regenerated by running the tests
 ### with "make check" and then doing `md5sum tests/* > md5sum.txt`
@@ -112,7 +114,8 @@ TESTS = test_scripts/test_simreads.test \
         test_scripts/test_states.test \
         test_scripts/test_amrfinder.test \
         test_scripts/test_hypermr.test \
-        test_scripts/test_diff.test
+        test_scripts/test_diff.test \
+        test_scripts/test_mlml.test
 
 TEST_EXTENSIONS = .test
 
@@ -239,4 +242,5 @@ CLEANFILES = \
     tests/reads.epiread \
     tests/two_epialleles.amr \
     tests/araTha1_simulated.hypermr \
-    tests/methylome_ab.diff
+    tests/methylome_ab.diff \
+    tests/mlml.out