Updates for new version number 1.2.5 in README.md, quickstart.md, the md5sums for testing, and the version defined in configure.ac

Author: andrewdavidsmith

README.md

@@ -12,7 +12,7 @@ sequencing (RRBS). These tools focus on overcoming the computing
 challenges imposed by the scale of genome-wide DNA methylation data,
 which is usually the early parts of data analysis.
 
-## Installing release 1.2.4
+## Installing release 1.2.5
 
 The documentation for DNMTools can be found
 [here](https://dnmtools.readthedocs.io). But if you want to install
@@ -46,14 +46,14 @@ repo, it is easiest if all dependencies are available through conda.
 
 ### Configuration
 
-* Download [dnmtools-1.2.4.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.2.4/dnmtools-1.2.4.tar.gz).
+* Download [dnmtools-1.2.5.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.2.5/dnmtools-1.2.5.tar.gz).
 * Unpack the archive:
 ```console
-tar -zxvf dnmtools-1.2.4.tar.gz
+tar -zxvf dnmtools-1.2.5.tar.gz
 ```
 * Move into the dnmtools directory and create a build directory:
 ```console
-cd dnmtools-1.2.4 && mkdir build && cd build
+cd dnmtools-1.2.5 && mkdir build && cd build
 ```
 * Run the configuration script:
 ```console

configure.ac

@@ -14,7 +14,7 @@ dnl but WITHOUT ANY WARRANTY; without even the implied warranty of
 dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 dnl General Public License for more details.
 
-AC_INIT([dnmtools], [1.2.4], [[email protected]],
+AC_INIT([dnmtools], [1.2.5], [[email protected]],
         [dnmtools], [https://github.com/smithlabcode/dnmtools])
 dnl the config.h is #included in the sources for version info
 AC_CONFIG_HEADERS([config.h])

data/md5sum.txt

@@ -1,20 +1,16 @@
-cd862d6d57ea148375ddec9935574dfb  tests/reads_1.fq.gz
-43947b43b6888a17d9e8036692ce54c5  tests/reads_2.fq.gz
 96bfaea99753a9cf6193c5b7ced6d732  tests/reads.bsrate
 8e289a0d800c1165ca213812cbc75bdb  tests/reads.counts
+928314a9be1d53771de12192813248b1  tests/reads.counts.select
 9af847370bbb0e78fdc0cd435a9f724f  tests/reads.counts.sym
-4a27ffa9f858d8c32352d30c9623a338  tests/reads.fmt.sam
-e832cd0a2b0e1cfa43364610663590f3  tests/reads.fmt.srt.sam
-230fd48c3b9959a34078671770842fe6  tests/reads.fmt.srt.uniq.sam
+e824875c80173aa747a420e4a5b5134c  tests/reads.fmt.sam
+b9439fa8169177196aedd07e9b505125  tests/reads.fmt.srt.sam
+9e116ccb0a6f9b6799eb065272c3129b  tests/reads.fmt.srt.uniq.sam
 6dabc63bcab01f8c2b03708dad6bc0b7  tests/reads.hmr
 2610d1e63613e4e092f15aa132de3a20  tests/reads.levels
 8ee3daa36fad0e196d6d86696abed3dc  tests/reads.mstats
 f224f056226aea737d1b95d7f9ab0bbf  tests/reads.sam
-928314a9be1d53771de12192813248b1  tests/reads.counts.select
 2b465b326d17ddbe9ffb2485c165803a  tests/reads.ustats
 8f3f2215bfa31e28ea3298019a342333  tests/simreads_1.fq
 76868ccd937f018e11f293a14ad60444  tests/simreads_2.fq
-2eecc6b13afe9a99cf0fb0b40b51b4aa  tests/tRex1.fa
-38c48ad3aaecf76b1aa14a93de096f99  tests/tRex1.idx
-74e3b08d2628f422e0ebdd2682f50f5c  tests/tRex1_promoters.bed
 e98bcc653568a7ce1d2414a2b48a23b7  tests/tRex1_promoters.roi.bed
+38c48ad3aaecf76b1aa14a93de096f99  tests/tRex1.idx

docs/content/quickstart.md

@@ -60,14 +60,14 @@ would need to be activated when you want to use dnmtools.
 
 ### Configuration
 
-* Download [dnmtools-1.2.4.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.2.4/dnmtools-1.2.4.tar.gz).
+* Download [dnmtools-1.2.5.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.2.5/dnmtools-1.2.5.tar.gz).
 * Unpack the archive:
 ```console
-$ tar -zxvf dnmtools-1.2.4.tar.gz
+$ tar -zxvf dnmtools-1.2.5.tar.gz
 ```
 * Move into the dnmtools directory and create a build directory:
 ```console
-$ cd dnmtools-1.2.4
+$ cd dnmtools-1.2.5
 $ mkdir build && cd build
 ```
 * Run the configuration script: