Merge pull request #99 from smithlabcode/release-v126

updating version number to 1.3.0 for release

Author: andrewdavidsmith

README.md

@@ -12,7 +12,7 @@ sequencing (RRBS). These tools focus on overcoming the computing
 challenges imposed by the scale of genome-wide DNA methylation data,
 which is usually the early parts of data analysis.
 
-## Installing release 1.2.5
+## Installing release 1.3.0
 
 The documentation for DNMTools can be found
 [here](https://dnmtools.readthedocs.io). But if you want to install
@@ -46,14 +46,14 @@ repo, it is easiest if all dependencies are available through conda.
 
 ### Configuration
 
-* Download [dnmtools-1.2.5.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.2.5/dnmtools-1.2.5.tar.gz).
+* Download [dnmtools-1.3.0.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.3.0/dnmtools-1.3.0.tar.gz).
 * Unpack the archive:
 ```console
-tar -zxvf dnmtools-1.2.5.tar.gz
+tar -zxvf dnmtools-1.3.0.tar.gz
 ```
 * Move into the dnmtools directory and create a build directory:
 ```console
-cd dnmtools-1.2.5 && mkdir build && cd build
+cd dnmtools-1.3.0 && mkdir build && cd build
 ```
 * Run the configuration script:
 ```console

configure.ac

@@ -14,7 +14,7 @@ dnl but WITHOUT ANY WARRANTY; without even the implied warranty of
 dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 dnl General Public License for more details.
 
-AC_INIT([dnmtools], [1.2.5], [[email protected]],
+AC_INIT([dnmtools], [1.3.0], [[email protected]],
         [dnmtools], [https://github.com/smithlabcode/dnmtools])
 dnl the config.h is #included in the sources for version info
 AC_CONFIG_HEADERS([config.h])

data/md5sum.txt

@@ -1,21 +1,22 @@
-3ba5a1c4c420ca7a2dbd88290033c3bc  tests/tRex1.idx
-7a02c7d93111403a4619ccc74aa3c78e  tests/reads.sam
-3bf209c27c99134386ea63756ff9fe2c  tests/reads.mstats
-e7e9590475a7f9b1ae41701d81892e57  tests/two_epialleles.amr
+ae05a28de5643a512386e767b3aa963a  tests/araTha1_simulated.hypermr
+0048de3fc412cb12ec2e070c8151f86f  tests/methylome_ab.diff
+86ca23015535cf3295c0da3587a95f22  tests/radmeth_test_output.txt
 575f7daf8062c4aa3194370488794be8  tests/reads.bsrate
 68cc65a337d5529295c813f282665dfe  tests/reads.counts
-75c91fad1d5fd5763c57fbab51be820d  tests/reads.fmt.sam
-d6792d4e7e5f08a16c738cca74468ded  tests/reads.fmt.srt.sam
+1f29966bbbc11985f724c8e0c0f1db2b  tests/reads.counts.select
+34f5eddd80d5d35131f92697d4cca896  tests/reads.counts.sym
+5f6bd7100470c5306b41b6a56fe6690e  tests/reads.epiread
+97508d22db32305d4688db8374d1a04a  tests/reads.fmt.sam
+6de21c61705040072be76cddae481cfa  tests/reads.fmt.srt.sam
+1cf51932cef739544b91a41bdfdb8841  tests/reads.fmt.srt.uniq.sam
 103225f9a3adc45836e366551989909b  tests/reads.hmr
-ae05a28de5643a512386e767b3aa963a  tests/araTha1_simulated.hypermr
 3cbec246887d1837f004e4643148f7e6  tests/reads.levels
-86ca23015535cf3295c0da3587a95f22  tests/radmeth_test_output.txt
-b5270bb38d798741cfa74f411a0d49bf  tests/tRex1_promoters.roi.bed
-1f29966bbbc11985f724c8e0c0f1db2b  tests/reads.counts.select
+3bf209c27c99134386ea63756ff9fe2c  tests/reads.mstats
+7a02c7d93111403a4619ccc74aa3c78e  tests/reads.sam
+b067a733102e611ca614ae22fc944471  tests/reads.ustats
 8e5ad0faefe241de9c2c5748e005e2e8  tests/simreads_1.fq
 4ebacfec717182fafce46b037591b228  tests/simreads_2.fq
-5f6bd7100470c5306b41b6a56fe6690e  tests/reads.epiread
-34f5eddd80d5d35131f92697d4cca896  tests/reads.counts.sym
-5d1ecf8d4c8a62b274f5d07e7de7d01c  tests/reads.fmt.srt.uniq.sam
-b067a733102e611ca614ae22fc944471  tests/reads.ustats
-0048de3fc412cb12ec2e070c8151f86f  tests/methylome_ab.diff
+3ba5a1c4c420ca7a2dbd88290033c3bc  tests/tRex1.idx
+b5270bb38d798741cfa74f411a0d49bf  tests/tRex1_promoters.roi.bed
+e7e9590475a7f9b1ae41701d81892e57  tests/two_epialleles.amr
+ec6a686617cad31e9f7a37a3d378e6ed  tests/two_epialleles.states

docs/content/quickstart.md

@@ -60,14 +60,14 @@ would need to be activated when you want to use dnmtools.
 
 ### Configuration
 
-* Download [dnmtools-1.2.5.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.2.5/dnmtools-1.2.5.tar.gz).
+* Download [dnmtools-1.3.0.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.3.0/dnmtools-1.3.0.tar.gz).
 * Unpack the archive:
 ```console
-$ tar -zxvf dnmtools-1.2.5.tar.gz
+$ tar -zxvf dnmtools-1.3.0.tar.gz
 ```
 * Move into the dnmtools directory and create a build directory:
 ```console
-$ cd dnmtools-1.2.5
+$ cd dnmtools-1.3.0
 $ mkdir build && cd build
 ```
 * Run the configuration script: