@@ -53,17 +53,19 @@ $ make install
5353
5454### Installing from source
5555
56- Developers looking to use the latest commits can compile the cloned repository using the ` Makefile `
57- within the ` src ` directory. The process is simple:
56+ Developers looking to use the latest commits can compile the cloned
57+ repository using the ` Makefile ` within the ` src ` directory. The
58+ process is simple:
5859```
5960$ cd src/
6061$ make
6162```
6263If the desired input is in ` .bam ` format, ` htslib ` is required. Type
6364```
64- make HAVE_HTSLIB=1 all
65+ make HAVE_HTSLIB=1 all
6566```
66- to make the programs. The HTSLib library can be obtained here: http://www.htslib.org/download
67+ to make the programs. The HTSLib library can be obtained here:
68+ http://www.htslib.org/download
6769
6870INPUT FILE FORMATS:
6971========================================================================
@@ -149,26 +151,31 @@ encountered when compiling the preseq binary.
149151
150152We released an R package called
151153[ preseqR] ( http://cran.r-project.org/web/packages/preseqR/index.html )
152- along with preseq. It makes preseq available in the R statistical
153- environment. The submodule preseqR contains all required source code
154- to build the R package.
154+ along with preseq. This makes most of the preseq functionality
155+ available in the R statistical environment, and includes some new
156+ functionality. The preseqR directory contains all required source code
157+ to build this R package.
155158
156159CONTACT INFORMATION:
157160========================================================================
161+ Andrew D. Smith
162+ andrewds@usc.edu
163+
158164Timothy Daley
159165tdaley@stanford.edu
166+
160167http://smithlabresearch.org
161168
162169HISTORY
163170========================================================================
164- preseq was originally developed by Timothy Daley and Andrew Smith
165- at the University of Southern California.
171+ Preseq was originally developed by Timothy Daley and Andrew D. Smith
172+ at University of Southern California.
166173
167174LICENSE
168175========================================================================
169- The preseq software for estimating complexity
170- Copyright (C) 2014-2019 Timothy Daley and Andrew D Smith and Chao Deng and
171- the University of Southern California
176+ The preseq software for estimating complexity Copyright (C) 2014-2020
177+ Timothy Daley and Andrew D Smith and Chao Deng and the University of
178+ Southern California
172179
173180This program is free software: you can redistribute it and/or modify
174181it under the terms of the GNU General Public License as published by
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