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README.md

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@@ -53,17 +53,19 @@ $ make install
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### Installing from source
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Developers looking to use the latest commits can compile the cloned repository using the `Makefile`
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within the `src` directory. The process is simple:
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Developers looking to use the latest commits can compile the cloned
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repository using the `Makefile` within the `src` directory. The
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process is simple:
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```
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$ cd src/
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$ make
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```
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If the desired input is in `.bam` format, `htslib` is required. Type
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```
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make HAVE_HTSLIB=1 all
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make HAVE_HTSLIB=1 all
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```
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to make the programs. The HTSLib library can be obtained here: http://www.htslib.org/download
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to make the programs. The HTSLib library can be obtained here:
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http://www.htslib.org/download
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INPUT FILE FORMATS:
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========================================================================
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We released an R package called
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[preseqR](http://cran.r-project.org/web/packages/preseqR/index.html)
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along with preseq. It makes preseq available in the R statistical
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environment. The submodule preseqR contains all required source code
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to build the R package.
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along with preseq. This makes most of the preseq functionality
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available in the R statistical environment, and includes some new
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functionality. The preseqR directory contains all required source code
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to build this R package.
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CONTACT INFORMATION:
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========================================================================
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Andrew D. Smith
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andrewds@usc.edu
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Timothy Daley
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tdaley@stanford.edu
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http://smithlabresearch.org
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HISTORY
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========================================================================
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preseq was originally developed by Timothy Daley and Andrew Smith
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at the University of Southern California.
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Preseq was originally developed by Timothy Daley and Andrew D. Smith
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at University of Southern California.
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LICENSE
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========================================================================
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The preseq software for estimating complexity
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Copyright (C) 2014-2019 Timothy Daley and Andrew D Smith and Chao Deng and
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the University of Southern California
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The preseq software for estimating complexity Copyright (C) 2014-2020
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Timothy Daley and Andrew D Smith and Chao Deng and the University of
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Southern California
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This program is free software: you can redistribute it and/or modify
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it under the terms of the GNU General Public License as published by

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