Accessing the normalized counts #8
Description
Hi there,
Extremely thankful for your very easy to use Riborex package. Results are really interesting. I was wondering if I'm able to retrieve the normalized counts from any of the engines? Using DESeq2 at present but would also like to try edgeR and Voom. Can you provide this in the package?
Also in the vignette you have "control" ordered before "treatment" although in the results output it is "treated vs control". This is not what I get when running the code. Does "treatment" have to be before "control" in order to get a "treated vs control" output in results for riborex?
Kindest regards and thanks for your great work,
Marina