Makefile.am: adding compiler options and warnings

Author: andrewdavidsmith

Makefile.am

@@ -1,8 +1,8 @@
 # This file is part of smithlab_cpp
 #
-# Copyright (C) 2010-2020: Andrew D. Smith and Meng Zhou
+# Copyright (C) 2010-2024: Andrew D. Smith
 #
-# Author: Andrew D. Smith and Meng Zhou
+# Author: Andrew D. Smith
 #
 # This is free software: you can redistribute it and/or modify it
 # under the terms of the GNU General Public License as published by
@@ -18,23 +18,42 @@ EXTRA_DIST = README.md
 
 ACLOCAL_AMFLAGS = -I m4
 
-CXXFLAGS = -Wall -O3
+CXXFLAGS = -Wall -Wextra -Wpedantic
+CXXFLAGS += -O3 -DNDEBUG
 
 lib_LIBRARIES = libsmithlab_cpp.a
 
-libsmithlab_cpp_a_SOURCES = GenomicRegion.cpp MappedRead.cpp            \
-OptionParser.cpp QualityScore.cpp chromosome_utils.cpp                  \
-bisulfite_utils.cpp smithlab_os.cpp smithlab_utils.cpp                  \
-zlib_wrapper.cpp dna_four_bit.cpp cigar_utils.cpp sam_record.cpp
+libsmithlab_cpp_a_SOURCES = \
+	GenomicRegion.cpp \
+	MappedRead.cpp \
+	OptionParser.cpp \
+	QualityScore.cpp \
+	chromosome_utils.cpp \
+	bisulfite_utils.cpp \
+	smithlab_os.cpp \
+	smithlab_utils.cpp \
+	zlib_wrapper.cpp \
+	dna_four_bit.cpp \
+	cigar_utils.cpp \
+	sam_record.cpp
 
 if ENABLE_HTS
 libsmithlab_cpp_a_SOURCES += htslib_wrapper.cpp
 endif
 
-include_HEADERS = GenomicRegion.hpp MappedRead.hpp OptionParser.hpp     \
-QualityScore.hpp chromosome_utils.hpp bisulfite_utils.hpp               \
-smithlab_os.hpp smithlab_utils.hpp zlib_wrapper.hpp dna_four_bit.hpp    \
-cigar_utils.hpp sam_record.hpp
+include_HEADERS = \
+	GenomicRegion.hpp \
+	MappedRead.hpp \
+	OptionParser.hpp \
+	QualityScore.hpp \
+	chromosome_utils.hpp \
+	bisulfite_utils.hpp \
+	smithlab_os.hpp \
+	smithlab_utils.hpp \
+	zlib_wrapper.hpp \
+	dna_four_bit.hpp \
+	cigar_utils.hpp \
+	sam_record.hpp
 
 if ENABLE_HTS
 include_HEADERS += htslib_wrapper.hpp