minor optimization on cigar ops

guilhermesena1 · guilhermesena1 · commit 81b0063260a0 · 2021-08-19T11:24:07.000-07:00
diff --git a/cigar_utils.hpp b/cigar_utils.hpp
@@ -64,8 +64,7 @@ cigar_qseq_ops(InputItr itr, const InputItr last) {
   size_t op_count = 0;
   while (itr != last) {
     const size_t curr_val = extract_op_count(itr, last);
-    if (consumes_query(*itr++))
-      op_count += curr_val;
+    op_count += curr_val*consumes_query(*itr++);
   }
   return op_count;
 }
@@ -82,8 +81,7 @@ cigar_rseq_ops(InputItr itr, const InputItr last) {
   size_t op_count = 0;
   while (itr != last) {
     const size_t curr_val = extract_op_count(itr, last);
-    if (consumes_reference(*itr++))
-      op_count += curr_val;
+    op_count += curr_val*consumes_reference(*itr++);
   }
   return op_count;
 }

Original file line number	Diff line number	Diff line change
`@@ -64,8 +64,7 @@ cigar_qseq_ops(InputItr itr, const InputItr last) {`
`64`	`64`	`size_t op_count = 0;`
`65`	`65`	`while (itr != last) {`
`66`	`66`	`const size_t curr_val = extract_op_count(itr, last);`
`67`		`- if (consumes_query(*itr++))`
`68`		`- op_count += curr_val;`
	`67`	`+ op_count += curr_valconsumes_query(itr++);`
`69`	`68`	`}`
`70`	`69`	`return op_count;`
`71`	`70`	`}`
`@@ -82,8 +81,7 @@ cigar_rseq_ops(InputItr itr, const InputItr last) {`
`82`	`81`	`size_t op_count = 0;`
`83`	`82`	`while (itr != last) {`
`84`	`83`	`const size_t curr_val = extract_op_count(itr, last);`
`85`		`- if (consumes_reference(*itr++))`
`86`		`- op_count += curr_val;`
	`84`	`+ op_count += curr_valconsumes_reference(itr++);`
`87`	`85`	`}`
`88`	`86`	`return op_count;`
`89`	`87`	`}`