Support for Gitlab Hosts

[pgierz]

At the moment, it seems as if when I enter a gitlab address to start from, I get a gitlab entry, but without checking for the host.

snakedeploy deploy-workflow --branch master https://gitlab.awi.de/mesh/meshtools-creator workflow/fesom/create-mesh

That works fine, but I have a Snakefile now with an incomplete gitlab function call:

cat workflow/fesom/create-mesh/workflow/Snakefile
from snakemake.utils import min_version


min_version("6.10.0")


configfile: "config/config.yaml"


# declare https://gitlab.awi.de/mesh/meshtools-creator as a module
module meshtools_creator:
    snakefile:
        gitlab("mesh/meshtools-creator", path="workflow/Snakefile", branch="master")
    config:
        config


# use all rules from https://gitlab.awi.de/mesh/meshtools-creator
use rule * from meshtools_creator

I was also curious about how it is possible to "compose" various workflows, I guess that is what snakedeploy is designed for, but maybe I am overlooking something: don't I still need the end-user to write a file workflow/Snakefile that includes my newly deployed workflow from snakedeploy?