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lines changed Original file line number Diff line number Diff line change @@ -39,17 +39,17 @@ Whether used disk space shall be printed if Snakemake fails. Can be either `true
3939 args : ' --lint'
4040
4141- name : Testing
42- uses : snakemake/snakemake-github-action@v1
42+ uses : snakemake/snakemake-github-action@v2
4343 with :
4444 directory : ' .test'
4545 snakefile : ' workflow/Snakefile'
46- args : ' --cores 1 --use- conda --conda-cleanup-pkgs cache'
46+ args : ' --cores 1 --sdm conda --conda-cleanup-pkgs cache'
4747 stagein : ' ' # additional preliminary commands to run (can be multiline)
4848 show-disk-usage-on-error : true
4949
5050
5151- name : Create container file
52- uses : snakemake/snakemake-github-action@v1
52+ uses : snakemake/snakemake-github-action@v2
5353 with :
5454 snakefile : ' workflow/Snakefile'
5555 task : ' containerize'
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