testing

Author: johanneskoester

.github/workflows/test.yml

@@ -15,8 +15,7 @@ jobs:
         run: docker build . --tag snakemake/snakemake-image-kubeflow
       - name: Run tests
         run: |
-          docker run --rm snakemake/snakemake-image-kubeflow bash -c 'snakemake --version'
-          docker run --entrypoint bash --rm snakemake/snakemake-image-kubeflow snakemake --help
-          docker run --rm snakemake/snakemake-image-kubeflow snakemake --list-plugins
-          docker run --rm snakemake/snakemake-image-kubeflow snakemake --list-profiles
-          docker run --rm snakemake/snakemake-image-kubeflow which setup-wizard
+          for cmd in "snakemake --version" "which setup-wizard"
+          do
+            docker run --rm snakemake/snakemake-image-kubeflow bash -c "source /home/jovyan/.bashrc; $cmd"
+          done