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### Step 1: Install Snakemake and Snakedeploy
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Snakemake and Snakedeploy are best installed via the [Mamba package manager](https://github.com/mamba-org/mamba) (a drop-in replacement for conda). If you have neither Conda nor Mamba, it is recommended to install [Miniforge](https://github.com/conda-forge/miniforge).
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More details regarding Mamba can be found [here](https://github.com/mamba-org/mamba).
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When using Mamba, run
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Snakemake and Snakedeploy are best installed via the [Conda](https://conda.io). It is recommended to install conda via [Miniforge](https://github.com/conda-forge/miniforge). Run
to install both Snakemake and Snakedeploy in an isolated environment. For all following commands ensure that this environment is activated _via_
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conda activate snakemake
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```
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For other installation methods, refer to the [Snakemake](https://snakemake.readthedocs.io/en/stable/getting_started/installation.html) and [Snakedeploy](https://snakedeploy.readthedocs.io/en/stable/getting_started/installation.html) documentation.
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### Step 2: Deploy workflow
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With Snakemake and Snakedeploy installed, the workflow can be deployed as follows.
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