Update regression for block aligner

Author: milot-mirdita

regression/run_cluster.sh

@@ -8,7 +8,7 @@ CLUDB="${RESULTS}/clu"
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="15695"
+TARGET="15698"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_cluster_update.sh

@@ -17,7 +17,7 @@ CLUSTERMEMEBER=$(wc -l "$RESULTS/clu_updated.tsv" | awk '{print $1}')
 CLUSTER=$(echo $(cut -f1 "$RESULTS/clu_updated.tsv" | sort -u | wc -l))
 UPDATEDSEQCNT=$(wc -l "$RESULTS/seqdb_update.index" | awk '{print $1}')
 
-TARGET="32131 24744 32131"
+TARGET="32131 24753 32131"
 ACTUAL="$CLUSTERMEMEBER $CLUSTER $UPDATEDSEQCNT"
 awk -v actual="$ACTUAL" -v target="$TARGET" 'BEGIN { print (actual == target) ? "GOOD" : "BAD"; \
     print "Expected: ", target; \

regression/run_easy_cluster.sh

@@ -3,7 +3,7 @@
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="15695"
+TARGET="15698"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_easy_cluster_reassign.sh

@@ -4,7 +4,7 @@ cat  "${DATADIR}/clu.fasta" | "${MMSEQS}" easy-cluster stdin "$RESULTS/results"
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="17239"
+TARGET="17234"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_easy_profile.sh

@@ -7,7 +7,7 @@ LC_ALL=C sort -k1,1 -k11,11g "$RESULTS/results_aln.m8" > "$RESULTS/results_aln_s
 
 "${EVALUATE}" "$QUERY" "$TARGET" "$RESULTS/results_aln_sorted.m8" "${RESULTS}/evaluation_roc5.dat" 4000 1 | tee "${RESULTS}/evaluation.log"
 ACTUAL=$(grep "^ROC5 AUC:" "${RESULTS}/evaluation.log" | cut -d" " -f3)
-TARGET="0.333245"
+TARGET="0.333212"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_expand.sh

@@ -13,14 +13,14 @@ TARGETDB="${RESULTS}/targetannotation"
 "${MMSEQS}" convertalis "$QUERYDB" "$TARGETDB" "$RESULTS/results_ac" "$RESULTS/results_aln.m8"
 "${EVALUATE}" "$QUERY" "$TARGET" "$RESULTS/results_aln.m8" "${RESULTS}/evaluation_roc5.dat" 4000 1 | tee "${RESULTS}/evaluation.log"
 ACTUAL1=$(grep "^ROC5 AUC:" "${RESULTS}/evaluation.log" | cut -d" " -f3)
-TARGET1="0.170241"
+TARGET1="0.170247"
 
 "${MMSEQS}" expand2profile "$QUERYDB" "$TARGETDB" "$RESULTS/results_ab" "$RESULTS/results_bc" "$RESULTS/prof_ac"
 "${MMSEQS}" search "$RESULTS/prof_ac" "$TARGETDB" "$RESULTS/results_prof" "$RESULTS/tmp" -e 10000 -s 2 -a --max-seqs 4000
 "${MMSEQS}" convertalis "$QUERYDB" "$TARGETDB" "$RESULTS/results_prof" "$RESULTS/results_prof.m8"
 "${EVALUATE}" "$QUERY" "$TARGET" "$RESULTS/results_prof.m8" "${RESULTS}/evaluation_roc5.dat" 4000 1 | tee "${RESULTS}/evaluation.log"
 ACTUAL2=$(grep "^ROC5 AUC:" "${RESULTS}/evaluation.log" | cut -d" " -f3)
-TARGET2="0.225243"
+TARGET2="0.224955"
 
 awk -v actual1="$ACTUAL1" -v target1="$TARGET1" -v actual2="$ACTUAL2" -v target2="$TARGET2" \
     'BEGIN { print (actual1 == target1 && actual2 == target2) ? "GOOD" : "BAD"; print "Expected: "target1", "target2; print "Actual: "actual1", "actual2; }' \

regression/run_profile.sh

@@ -14,7 +14,7 @@ LC_ALL=C sort -k1,1 -k11,11g "$RESULTS/results_aln.m8" > "$RESULTS/results_aln_s
 
 "${EVALUATE}" "$QUERY" "$TARGET" "$RESULTS/results_aln_sorted.m8" "${RESULTS}/evaluation_roc5.dat" 4000 1 | tee "${RESULTS}/evaluation.log"
 ACTUAL=$(grep "^ROC5 AUC:" "${RESULTS}/evaluation.log" | cut -d" " -f3)
-TARGET="0.366151"
+TARGET="0.366192"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"