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Description
I am trying to upload the PDB (link: https://www.dropbox.com/s/koxlbk5ntgzzlv6/protchain1.pdb?dl=0) which only has chain A in the RF Diffusion Colab but I am getting the following error:
7ki0.pdb(chemical/x-pdb) - 264951 bytes, last modified: n/a - 0% done
---------------------------------------------------------------------------
MessageError Traceback (most recent call last)
<timed exec> in <module>
<timed exec> in run_diffusion(contigs, path, pdb, iterations, symmetry, order, hotspot, chains, add_potential, partial_T, num_designs, use_beta_model, visual)
<timed exec> in get_pdb(pdb_code)
[/usr/local/lib/python3.11/dist-packages/google/colab/files.py](https://lkvs0bt85ys-496ff2e9c6d22116-0-colab.googleusercontent.com/outputframe.html?vrz=colab_20250206-060131_RC00_723872503#) in upload(target_dir)
70 """
71
---> 72 uploaded_files = _upload_files(multiple=True)
73 # Mapping from original filename to filename as saved locally.
74 local_filenames = dict()
2 frames
[/usr/local/lib/python3.11/dist-packages/google/colab/_message.py](https://lkvs0bt85ys-496ff2e9c6d22116-0-colab.googleusercontent.com/outputframe.html?vrz=colab_20250206-060131_RC00_723872503#) in read_reply_from_input(message_id, timeout_sec)
101 ):
102 if 'error' in reply:
--> 103 raise MessageError(reply['error'])
104 return reply.get('data', None)
105
MessageError: RangeError: Maximum call stack size exceeded.
The code-snippet corresponding the selection is following
contigs = "A:30" #@param {type:"string"}
pdb = "" #@param {type:"string"}
I am really stuck, any help to debug this error will be highly appreciated?
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