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Using ProteinMPNN *without* oxygens? #199

@gian-marco-visani-dyno

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@gian-marco-visani-dyno

Hi,
I noticed that if I run ProteinMPNN on backbones without the oxygens, the model does not break; however, the designs look very different with vs. without the addition of oxygens.
My question is: should I expect the designs made without oxygens to be non-sensical? if this is true, then I wonder why the model doesn't throw an error instead.

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