Merge pull request #96 from JaxLang/main #285
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| # | |
| # Run pytest locally to update durations file: | |
| # pytest -ra --mpl --mpl-baseline-path=baseline --mpl-baseline-relative --mpl-generate-summary=html --nbmake -n=auto --nbmake-kernel=python3 --nbmake-timeout=500 --ignore=SEP_Multi-Instrument-Plot.ipynb --ignore=SEP_PyOnset.ipynb --durations=0 --store-durations | |
| name: pytest | |
| on: | |
| push: | |
| # branches: [ "main" ] | |
| pull_request: | |
| # branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| group: [1, 2, 3, 4, 5] | |
| steps: | |
| - uses: actions/checkout@v6 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v6 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install flake8 nbmake pytest pytest-doctestplus pytest-cov pytest-mpl pytest-xdist pytest-split | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest -ra --mpl --mpl-baseline-path=baseline --mpl-baseline-relative --mpl-generate-summary=html --mpl-results-path='/home/runner/work/sep_tools/tests_report/' --cov --cov-report=xml --nbmake -n=auto --nbmake-kernel=python3 --nbmake-timeout=500 --ignore=SEP_Multi-Instrument-Plot.ipynb --ignore=SEP_PyOnset.ipynb --durations=0 --splits 5 --group ${{ matrix.group }} --splitting-algorithm=least_duration | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Save pytest-mpl report as artifcat | |
| if: always() | |
| uses: actions/upload-artifact@v6 | |
| with: | |
| name: ${{ matrix.python-version }}-pytest-mpl-report-artifact-group${{ matrix.group }} | |
| path: "/home/runner/work/sep_tools/tests_report/" |