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Description
Running in directory /home/ctbrown/scratch3/sourmash-midgie-raker/splits,
command:
sourmash scripts manysearch 's__Mesorhizobium sp000502715.sig.zip' /group/ctbrowngrp5/sra-metagenomes/20241128-k21-s1000 -k 21 -o /tmp/xxx.csv
Full error:
ksize: 21 / scaled: None / moltype: DNA / threshold: 0.01
searching all sketches in 's__Mesorhizobium sp000502715.sig.zip' against '/group/ctbrowngrp5/sra-metagenomes/20241128-k21-s1000' using 64 threads
selection scaled: None
Loaded DB
Setting scaled=1000 from the database
Reading query(s) from: 's__Mesorhizobium sp000502715.sig.zip'
Loaded 1 query signature(s)
thread '<unnamed>' panicked at /home/conda/feedstock_root/build_artifacts/sourmash_plugin_branchwater_1736968930241/_build_env/.cargo/registry/src/index.crates.io-6f17d22bba15001f/sourmash-0.18.0/src/index/revindex/mod.rs:303:68:
called `Result::unwrap()` on an `Err` value: Custom { kind: Other, error: "unknown cookie value" }
note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
Traceback (most recent call last):
File "/home/ctbrown/.conda/envs/grist/bin/sourmash", line 11, in <module>
sys.exit(main())
^^^^^^
File "/home/ctbrown/.conda/envs/grist/lib/python3.12/site-packages/sourmash/__main__.py", line 20, in main
retval = mainmethod(args)
^^^^^^^^^^^^^^^^
File "/home/ctbrown/.conda/envs/grist/lib/python3.12/site-packages/sourmash_plugin_branchwater/__init__.py", line 129, in main
status = sourmash_plugin_branchwater.do_manysearch(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
pyo3_runtime.PanicException: called `Result::unwrap()` on an `Err` value: Custom { kind: Other, error: "unknown cookie value" }
This happens with at least a couple of hundred different species level queries; I don't think it's the query that's the problem.
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