diff --git a/spring-data-jpa/src/main/java/org/springframework/data/jpa/repository/support/SimpleJpaRepository.java b/spring-data-jpa/src/main/java/org/springframework/data/jpa/repository/support/SimpleJpaRepository.java
index bda460e3c5..27dc8a54ce 100644
--- a/spring-data-jpa/src/main/java/org/springframework/data/jpa/repository/support/SimpleJpaRepository.java
+++ b/spring-data-jpa/src/main/java/org/springframework/data/jpa/repository/support/SimpleJpaRepository.java
@@ -93,6 +93,7 @@
  * @author Ernst-Jan van der Laan
  * @author Diego Krupitza
  * @author Seol-JY
+ * @author SangMin Lee
  */
 @Repository
 @Transactional(readOnly = true)
@@ -237,6 +238,15 @@ public void deleteAllByIdInBatch(Iterable<ID> ids) {
 			deleteAllInBatch(entities);
 		} else {
 
+			ids.forEach(id -> {
+				T entity = entityManager.find(entityInformation.getJavaType(), id);
+				if (entity != null) {
+					entityManager.remove(entity);
+				}
+			});
+
+			entityManager.clear();
+
 			String queryString = String.format(DELETE_ALL_QUERY_BY_ID_STRING, entityInformation.getEntityName(),
 					entityInformation.getIdAttribute().getName());
 
@@ -275,6 +285,14 @@ public void deleteAllInBatch(Iterable<T> entities) {
 			return;
 		}
 
+		for (T entity : entities) {
+			if (entityManager.contains(entity)) {
+				entityManager.remove(entity);
+			}
+		}
+
+		entityManager.clear();
+
 		applyAndBind(getQueryString(DELETE_ALL_QUERY_STRING, entityInformation.getEntityName()), entities, entityManager)
 				.executeUpdate();
 	}
diff --git a/spring-data-jpa/src/test/java/org/springframework/data/jpa/repository/UserRepositoryTests.java b/spring-data-jpa/src/test/java/org/springframework/data/jpa/repository/UserRepositoryTests.java
index 225336983e..a240e32116 100644
--- a/spring-data-jpa/src/test/java/org/springframework/data/jpa/repository/UserRepositoryTests.java
+++ b/spring-data-jpa/src/test/java/org/springframework/data/jpa/repository/UserRepositoryTests.java
@@ -97,6 +97,7 @@
  * @author Geoffrey Deremetz
  * @author Krzysztof Krason
  * @author Yanming Zhou
+ * @author SangMin Lee
  */
 @ExtendWith(SpringExtension.class)
 @ContextConfiguration("classpath:application-context.xml")
@@ -3416,6 +3417,35 @@ void mergeWithNativeStatement() {
 				.map(User::getAge).contains(30);
 	}
 
+	@Test // GH-3360
+	void removeWhenDeleteAllInBatchWithEntities() {
+
+		flushTestUsers();
+		List<User> userList = repository.findAll();
+
+		repository.deleteAllInBatch(userList);
+
+		userList.forEach(user ->
+				assertThat(em.contains(user)).isFalse()
+		);
+
+	}
+
+	@Test // GH-3360
+	void removeWhenDeleteAllByIdInBatch() {
+
+		flushTestUsers();
+		List<User> userList = repository.findAll();
+		List<Integer> userIds = userList.stream().map(User::getId).toList();
+
+		repository.deleteAllByIdInBatch(userIds);
+
+		userList.forEach(user ->
+				assertThat(em.contains(user)).isFalse()
+		);
+
+	}
+
 	private Page<User> executeSpecWithSort(Sort sort) {
 
 		flushTestUsers();