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Replace static `dokkaProjects` list with dynamic Kotlin source
detection, eliminating manual maintenance and improving automation.
- Remove `dokkaProjects` list from ext block that required manual
updates when adding Kotlin modules
- Move Dokka plugin and configuration back into main `javaProjects`
configure block for simpler structure
- Update `docsZip` task to dynamically find projects with Kotlin
sources using `javaProjects.findAll {it.file('src/main/kotlin').
exists()}` instead of referencing static list
- Change output directory API from `buildDirectory.file('kdoc')` to
`buildDirectory.dir('kdoc')` for semantically correct directory
reference
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