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I formatted your original examples to use code blocks, which makes the issue apparent:

	``` {.bash} java -agentpath:/path/to/agent/lightrun_agent.so RestOfTheArgumentsHere
   ```

You're mixing tabs and whitespace for indentation. You should use the same amount of spaces. Furthermore, the list is also not correctly indented. This should work:

## Deploy the agent

!!! note
    Lightrun currently supports Java applications.
    
    Once you've deployed the agent, you should add it to your application as follows: 

    1. From the application server, navigate to the folder where your application resides. 

    2. Copy the following code:

    ``` {.bash} java -agentpath:/path/to/agent/lightr…

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@spinningrachel
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Answer selected by squidfunk
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