chore: update tool list for mongodb

Automatically updated tool list using 'thv mcp list --server mongodb'

Co-authored-by: renovate[bot] <renovate[bot]@users.noreply.github.com>

Author: actions-user

registry/mongodb/spec.yaml

@@ -10,38 +10,27 @@ tier: Official
 status: Active
 transport: stdio
 tools:
-  - atlas-list-orgs
-  - atlas-list-projects
-  - atlas-create-project
-  - atlas-list-clusters
-  - atlas-inspect-cluster
-  - atlas-create-free-cluster
-  - atlas-connect-cluster
-  - atlas-inspect-access-list
-  - atlas-create-access-list
-  - atlas-list-db-users
-  - atlas-create-db-user
-  - atlas-list-alerts
-  - connect
-  - find
   - aggregate
+  - collection-indexes
+  - collection-schema
+  - collection-storage-size
+  - connect
   - count
-  - insert-one
-  - insert-many
+  - create-collection
   - create-index
-  - update-one
-  - update-many
-  - rename-collection
-  - delete-one
+  - db-stats
   - delete-many
   - drop-collection
   - drop-database
-  - list-databases
+  - explain
+  - export
+  - find
+  - insert-many
   - list-collections
-  - collection-indexes
-  - collection-schema
-  - collection-storage-size
-  - db-stats
+  - list-databases
+  - mongodb-logs
+  - rename-collection
+  - update-many
 metadata:
   stars: 581
   pulls: 5060