Merge pull request #440 from stan-dev/release/v2.10.0

syclik · web-flow · commit d7b77d793d7d · 2016-06-23T13:25:59.000-04:00
release/v2.10.0
diff --git a/.gitmodules b/.gitmodules
@@ -1,3 +1,3 @@
 [submodule "stan"]
-	path = stan
+	path = stan_2.10.0
         url = https://github.com/stan-dev/stan
diff --git a/doc/cmdstan-guide-2.10.0.pdf b/doc/cmdstan-guide-2.10.0.pdf
diff --git a/doc/stan-reference-2.10.0.pdf b/doc/stan-reference-2.10.0.pdf
diff --git a/makefile b/makefile
@@ -24,8 +24,8 @@ AR = ar
 ##
 # Library locations
 ##
-STAN ?= stan/
-MATH ?= $(STAN)lib/stan_math/
+STAN ?= stan_2.10.0/
+MATH ?= $(STAN)lib/stan_math_2.10.0/
 -include $(MATH)make/libraries
 
 ##
@@ -37,7 +37,7 @@ LDLIBS =
 LDLIBS_STANC = -Lbin -lstanc
 EXE = 
 PATH_SEPARATOR = /
-CMDSTAN_VERSION := 2.9.0
+CMDSTAN_VERSION := 2.10.0
 
 ##
 # Get information about the compiler used.
diff --git a/src/docs/cmdstan-guide/cmdstan-guide.tex b/src/docs/cmdstan-guide/cmdstan-guide.tex
@@ -1,8 +1,8 @@
 \documentclass[10pt,openany]{book}
 
-\usepackage{../../../stan/src/docs/stan-reference/stan-manuals}
+\usepackage{../../../stan_2.10.0/src/docs/stan-reference/stan-manuals}
 
-\newcommand{\cmdstanversion}{2.9.0}
+\newcommand{\cmdstanversion}{2.10.0}
 \newcommand{\CmdStan}{CmdStan\xspace}
 
 \begin{document}
diff --git a/src/docs/cmdstan-guide/getting-started.tex b/src/docs/cmdstan-guide/getting-started.tex
@@ -86,7 +86,7 @@ \section{Building \CmdStan}
 %
 \begin{quote}
   \begin{Verbatim}
---- CmdStan v2.9.0 built ---
+--- CmdStan v2.10.0 built ---
   \end{Verbatim}
 \end{quote}
 %
diff --git a/src/docs/cmdstan-guide/installation.tex b/src/docs/cmdstan-guide/installation.tex
@@ -71,7 +71,7 @@ \subsubsection{Stan Library Source}
 \begin{itemize}
 \item Home: \url{http://mc-stan.org/stan.html}
 \item License: BSD
-\item Tested Version: 2.9.0
+\item Tested Version: 2.10.0
 \end{itemize}
 %
 The \Stan source code is distributed with \CmdStan.
@@ -85,7 +85,7 @@ \subsubsection{Stan Math Library Source}
 \begin{itemize}
 \item Home: \url{http://mc-stan.org}
 \item License: BSD
-\item Tested Version: 2.9.0
+\item Tested Version: 2.10.0
 \end{itemize}
 %
 The \Stan Math Library source code is distributed with \CmdStan
@@ -296,7 +296,7 @@ \subsection{Downloading and Unpacking \CmdStan}
 %
 \begin{quote}
 \begin{Verbatim}[fontshape=sl,fontsize=\small]
-> tar --no-same-owner -xzf cmdstan-2.9.0.tar.gz 
+> tar --no-same-owner -xzf cmdstan-2.10.0.tar.gz 
 \end{Verbatim}
 \end{quote}
 %
@@ -450,7 +450,7 @@ \subsection{Downloading and Unpacking \CmdStan Source}
 %
 \begin{quote}
 \begin{Verbatim}[fontshape=sl,fontsize=\small]
-> tar -xzf cmdstan-2.9.0.tar.gz
+> tar -xzf cmdstan-2.10.0.tar.gz
 \end{Verbatim}
 \end{quote}
 
@@ -497,10 +497,10 @@ \subsubsection{Changing Library Locations}
 %
 \begin{itemize}
   \item \Verb|STAN|. The location of the \Stan source
-    directory. The default is \Verb|STAN=stan_2.9.0/|. Note: the
+    directory. The default is \Verb|STAN=stan_2.10.0/|. Note: the
     trailing forward slash is necessary.
   \item \Verb|MATH|. The location of the Stan Math Library. The
-    default is \Verb|MATH=stan/lib/stan_math_2.9.0/|.
+    default is \Verb|MATH=stan/l../stan_math_2.10.0/|.
   \item \Verb|BOOST|. The location of the Boost library. If
     \Verb|BOOST| is not explicitly set, this will default to the
     \Verb|lib/boost_1.60.0/| folder within \Verb|MATH|.
diff --git a/src/docs/cmdstan-guide/references.tex b/src/docs/cmdstan-guide/references.tex
@@ -4,4 +4,4 @@
 \makeatletter
 \renewcommand\@biblabel[1]{}
 \makeatother
-\bibliography{../../../stan/src/docs/bibtex/all}
+\bibliography{../../../stan_2.10.0/src/docs/bibtex/all}
diff --git a/src/docs/cmdstan-guide/title.tex b/src/docs/cmdstan-guide/title.tex
@@ -6,7 +6,7 @@
 \\[36pt]
 {
 \vfill
-\includegraphics[width=0.6in]{../../../stan/src/docs/stan-reference/img/stanlogo-main.pdf}}
+\includegraphics[width=0.6in]{../../../stan_2.10.0/src/docs/stan-reference/img/stanlogo-main.pdf}}
 \\
 \vspace*{6pt}
 {\small \url{http://mc-stan.org/}}
diff --git a/stan b/stan
diff --git a/stan_2.10.0 b/stan_2.10.0
@@ -0,0 +1 @@
+Subproject commit 5c2be544f4b03f989e818ed7ad2bf3404ee79fc7
diff --git a/test-all.sh b/test-all.sh
@@ -13,15 +13,15 @@ echo 'CmdStan tests'
 echo ''
 echo '------------------------------------------------------------'
 echo 'Stan tests'
-pushd stan/
+pushd stan_2.10.0/
 ./runTests.py src/test
 popd
 
 
 echo ''
 echo '------------------------------------------------------------'
 echo 'Stan Math Library tests'
-pushd stan/lib/stan_math/
+pushd stan_2.10.0/lib/stan_math_2.10.0/
 ./runTests.py test/unit
 ./runTests.py test/prob
 popd

Original file line number	Diff line number	Diff line change
`@@ -86,7 +86,7 @@ \section{Building \CmdStan}`
`86`	`86`	`%`
`87`	`87`	`\begin{quote}`
`88`	`88`	`\begin{Verbatim}`
`89`		`---- CmdStan v2.9.0 built ---`
	`89`	`+--- CmdStan v2.10.0 built ---`
`90`	`90`	`\end{Verbatim}`
`91`	`91`	`\end{quote}`
`92`	`92`	`%`
Original file line number	Diff line number	Diff line change
`@@ -6,7 +6,7 @@`
`6`	`6`	`\\[36pt]`
`7`	`7`	`{`
`8`	`8`	`\vfill`
`9`		`-\includegraphics[width=0.6in]{../../../stan/src/docs/stan-reference/img/stanlogo-main.pdf}}`
	`9`	`+\includegraphics[width=0.6in]{../../../stan_2.10.0/src/docs/stan-reference/img/stanlogo-main.pdf}}`
`10`	`10`	`\\`
`11`	`11`	`\vspace*{6pt}`
`12`	`12`	`{\small \url{http://mc-stan.org/}}`