Merge pull request #518 from stan-dev/release/v2.13.1

release/v2.13.1

Author: syclik

.github/ISSUE_TEMPLATE.md

@@ -24,4 +24,4 @@ Describe what you expect the output to be. Knowing the correct behavior is also
 Provide any additional information here.
 
 #### Current Version:
-v2.12.0
+v2.13.1

.gitmodules

@@ -1,3 +1,3 @@
 [submodule "stan"]
-	path = stan
+	path = stan_2.13.1
         url = https://github.com/stan-dev/stan

doc/cmdstan-guide-2.13.1.pdf

@@ -24,8 +24,8 @@ AR = ar
 ##
 # Library locations
 ##
-STAN ?= stan/
-MATH ?= $(STAN)lib/stan_math/
+STAN ?= stan_2.13.1/
+MATH ?= $(STAN)lib/stan_math_2.13.0/
 -include $(MATH)make/libraries
 
 ##
@@ -39,7 +39,7 @@ STANCFLAGS ?=
 USER_HEADER ?= $(dir $<)user_header.hpp
 EXE = 
 PATH_SEPARATOR = /
-CMDSTAN_VERSION := 2.12.0
+CMDSTAN_VERSION := 2.13.1
 
 ##
 # Get information about the compiler used.

doc/stan-reference-2.13.1.pdf

@@ -1,8 +1,8 @@
 \documentclass[10pt,openany]{book}
 
-\usepackage{../../../stan/src/docs/stan-reference/stan-manuals}
+\usepackage{../../../stan_2.13.1/src/docs/stan-reference/stan-manuals}
 
-\newcommand{\cmdstanversion}{2.12.0}
+\newcommand{\cmdstanversion}{2.13.1}
 \newcommand{\CmdStan}{CmdStan\xspace}
 
 \begin{document}

makefile

@@ -97,7 +97,7 @@ \section{Building \CmdStan}
 %
 \begin{quote}
   \begin{Verbatim}
---- CmdStan v2.12.0 built ---
+--- CmdStan v2.13.1 built ---
   \end{Verbatim}
 \end{quote}
 %

src/docs/cmdstan-guide/cmdstan-guide.tex

@@ -71,7 +71,7 @@ \subsubsection{Stan Library Source}
 \begin{itemize}
 \item Home: \url{http://mc-stan.org/stan.html}
 \item License: BSD
-\item Tested Version: 2.12.0
+\item Tested Version: 2.13.1
 \end{itemize}
 %
 The \Stan source code is distributed with \CmdStan.
@@ -85,7 +85,7 @@ \subsubsection{Stan Math Library Source}
 \begin{itemize}
 \item Home: \url{http://mc-stan.org}
 \item License: BSD
-\item Tested Version: 2.12.0
+\item Tested Version: 2.13.1
 \end{itemize}
 %
 The \Stan Math Library source code is distributed with \CmdStan
@@ -296,7 +296,7 @@ \subsection{Downloading and Unpacking \CmdStan}
 %
 \begin{quote}
 \begin{Verbatim}[fontshape=sl,fontsize=\small]
-> tar --no-same-owner -xzf cmdstan-2.12.0.tar.gz 
+> tar --no-same-owner -xzf cmdstan-2.13.1.tar.gz 
 \end{Verbatim}
 \end{quote}
 %
@@ -450,7 +450,7 @@ \subsection{Downloading and Unpacking \CmdStan Source}
 %
 \begin{quote}
 \begin{Verbatim}[fontshape=sl,fontsize=\small]
-> tar -xzf cmdstan-2.12.0.tar.gz
+> tar -xzf cmdstan-2.13.1.tar.gz
 \end{Verbatim}
 \end{quote}
 
@@ -515,10 +515,10 @@ \subsubsection{Changing Library Locations}
 %
 \begin{itemize}
   \item \Verb|STAN|. The location of the \Stan source
-    directory. The default is \Verb|STAN=stan_2.12.0/|. Note: the
+    directory. The default is \Verb|STAN=stan_2.13.1/|. Note: the
     trailing forward slash is necessary.
   \item \Verb|MATH|. The location of the Stan Math Library. The
-    default is \Verb|MATH=stan/l../stan_math_2.12.0/|.
+    default is \Verb|MATH=stan/l../stan_math_2.13.0/|.
   \item \Verb|BOOST|. The location of the Boost library. If
     \Verb|BOOST| is not explicitly set, this will default to the
     \Verb|lib/boost_1.60.0/| folder within \Verb|MATH|.

src/docs/cmdstan-guide/getting-started.tex

@@ -4,4 +4,4 @@
 \makeatletter
 \renewcommand\@biblabel[1]{}
 \makeatother
-\bibliography{../../../stan/src/docs/bibtex/all}
+\bibliography{../../../stan_2.13.1/src/docs/bibtex/all}

src/docs/cmdstan-guide/installation.tex

@@ -6,7 +6,7 @@
 \\[36pt]
 {
 \vfill
-\includegraphics[width=0.6in]{../../../stan/src/docs/stan-reference/img/stanlogo-main.pdf}}
+\includegraphics[width=0.6in]{../../../stan_2.13.1/src/docs/stan-reference/img/stanlogo-main.pdf}}
 \\
 \vspace*{6pt}
 {\small \url{http://mc-stan.org/}}