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Add JSON versions of data in bugs_examples/
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‎bugs_examples/vol1/blocker/blocker.data.json‎

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{
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"nc": [39, 116, 93, 1520, 365, 52, 939, 471, 282, 1921, 583, 266, 293, 883, 147, 213, 122, 154, 134, 218, 364, 674],
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"rc": [3, 14, 11, 127, 27, 6, 152, 48, 37, 188, 52, 47, 16, 45, 31, 38, 12, 6, 3, 40, 43, 39],
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"N": 22,
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"nt": [38, 114, 69, 1533, 355, 59, 945, 632, 278, 1916, 873, 263, 291, 858, 154, 207, 251, 151, 174, 209, 391, 680],
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"rt": [3, 7, 5, 102, 28, 4, 98, 60, 25, 138, 64, 45, 9, 57, 25, 33, 28, 8, 6, 32, 27, 22]
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}

‎bugs_examples/vol1/blocker/blocker.init.json‎

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{
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"mu": [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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"delta": [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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"d": 0,
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"delta_new": 0,
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"sigmasq_delta": 1
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}

‎bugs_examples/vol1/bones/bones.data.json‎

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{
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"ncat": [2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 3, 3, 3, 3, 3, 4, 5, 5, 5, 5, 5, 5],
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"nChild": 13,
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"nInd": 34,
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"grade": [
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[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 2, 1, 1],
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[2, 1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 3, 1, 1, 1, 1, 1, 1, 1, 1, 3, 1, 1, 2, 1, 1],
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[2, 1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 3, 1, 1, 1, 1, 1, 1, 1, 1, 4, 3, 3, 3, 1, 1],
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[2, 1, 1, 1, 2, 2, 1, 1, 1, 1, 1, 1, -1, 1, 1, 1, 1, 1, 1, 3, 1, 1, 1, 1, 1, 1, 1, 1, 4, 5, 4, 3, 1, 1],
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[2, 1, 1, 1, 2, 2, 1, 1, 2, 1, 1, 1, 1, 1, 1, 1, 2, 1, 1, 3, 2, 1, 1, 1, 1, 1, 3, 1, 5, 5, 5, 4, 2, 3],
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[2, 1, 1, 1, 2, 2, 1, 2, 1, 1, 1, 1, 1, 2, 1, 1, 2, -1, 1, 3, 2, 1, 1, 1, 1, 1, 3, 1, 5, 5, 5, 5, 3, 3],
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[2, 1, 1, 1, 2, 2, 1, 1, 1, -1, -1, 1, 1, 1, 1, 1, 2, -1, 1, 3, 3, 1, 1, 1, 1, 1, 3, 1, 5, 5, 5, 5, 3, 3],
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[2, 1, 2, 2, 2, 2, 2, 2, 1, -1, -1, 1, 2, 2, 1, 1, 2, 2, 1, 3, 2, 1, 1, 1, 1, 1, 3, 1, 5, 5, 5, 5, 3, 4],
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[2, 1, 1, 2, 2, 2, 2, 2, 2, 1, 1, 1, 2, 1, 1, 1, 2, 1, 1, 3, 3, 1, 1, 1, 1, 1, 3, 1, 5, 5, 5, 5, 4, 4],
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[2, 1, 2, 2, 2, 2, 2, 2, 2, 1, 1, 1, 2, 2, 2, 1, 2, -1, 2, 3, 3, 1, 1, 1, 1, 1, 3, 1, 5, 5, 5, 5, 5, 5],
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[2, 1, -1, 2, 2, 2, -1, 2, 2, 1, -1, -1, 2, 2, -1, -1, 2, 1, 2, 3, 3, -1, 1, -1, 1, 1, 3, 1, 5, 5, 5, 5, 5, 5],
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[2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, 1, -1, 2, 1, 3, 2, 5, 5, 5, 5, 5, 5],
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[2, 2, 2, 2, 2, 2, 2, 2, 2, 2, -1, 2, 2, 2, 2, 2, 2, 2, 2, 3, 3, 3, -1, 2, -1, 2, 3, 4, 5, 5, 5, 5, 5, 5]
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],
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"delta": [2.9541, 0.6603, 0.7965, 1.0495, 5.7874, 3.8376, 0.6324, 0.8272, 0.6968, 0.8747, 0.8136, 0.8246, 0.6711, 0.978, 1.1528, 1.6923, 1.0331, 0.5381, 1.0688, 8.1123, 0.9974, 1.2656, 1.1802, 1.368, 1.5435, 1.5006, 1.6766, 1.4297, 3.385, 3.3085, 3.4007, 2.0906, 1.0954, 1.5329],
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"gamma": [
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[0.7425, -1, -1, -1],
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[10.267, -1, -1, -1],
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[10.5215, -1, -1, -1],
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[9.3877, -1, -1, -1],
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[0.2593, -1, -1, -1],
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[-0.5998, -1, -1, -1],
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[10.5891, -1, -1, -1],
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[6.6701, -1, -1, -1],
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[8.8921, -1, -1, -1],
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[12.4275, -1, -1, -1],
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[12.4788, -1, -1, -1],
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[13.7778, -1, -1, -1],
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[5.8374, -1, -1, -1],
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[6.9485, -1, -1, -1],
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[13.7184, -1, -1, -1],
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[14.3476, -1, -1, -1],
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[4.8066, -1, -1, -1],
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[9.1037, -1, -1, -1],
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[10.7483, -1, -1, -1],
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[0.3887, 1.0153, -1, -1],
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[3.2573, 7.0421, -1, -1],
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[11.6273, 14.4242, -1, -1],
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[15.8842, 17.4685, -1, -1],
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[14.8926, 16.7409, -1, -1],
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[15.5487, 16.872, -1, -1],
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[15.4091, 17.0061, -1, -1],
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[3.9216, 5.2099, -1, -1],
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[15.475, 16.9406, 17.4944, -1],
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[0.4927, 1.3556, 2.3016, 3.2535],
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[1.3059, 1.8793, 2.497, 3.2306],
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[1.5012, 1.8902, 2.3689, 2.9495],
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[0.8021, 2.3873, 3.9525, 5.3198],
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[5.0022, 6.3704, 8.2832, 10.4988],
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[4.0168, 5.1537, 7.1053, 10.3038]
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]
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}

‎bugs_examples/vol1/dogs/dogs.data.json‎

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{
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"Ndogs": 30,
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"Y": [
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[0, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 0, 0, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 1, 1, 0, 0, 1, 1, 1, 1, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 0, 0, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 1, 0, 1, 0, 1, 1, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 0],
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[0, 0, 0, 0, 1, 0, 0, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 1, 1, 0, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 1, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 1, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 1, 0, 1, 0, 0, 0, 1, 0, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
22+
[0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
23+
[0, 0, 0, 0, 1, 1, 0, 1, 0, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
24+
[0, 0, 0, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
25+
[0, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 1, 1, 1, 1, 1, 1, 1],
26+
[0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
27+
[0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 0, 1, 0, 0, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 0, 0, 1, 1, 0, 1, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 1, 0, 1, 1, 1, 0, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
30+
[0, 0, 0, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 1, 0, 1, 0, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
32+
[0, 0, 0, 0, 1, 1, 0, 0, 1, 1, 1, 0, 1, 0, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1],
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[0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 0, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]
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],
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"Ntrials": 25
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}

‎bugs_examples/vol1/dogs/dogs.init.json‎

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{
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"alpha": -1,
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"beta": -1
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}

‎bugs_examples/vol1/dyes/dyes.data.json‎

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{
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"y": [
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[1545, 1440, 1440, 1520, 1580],
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[1540, 1555, 1490, 1560, 1495],
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[1595, 1550, 1605, 1510, 1560],
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[1445, 1440, 1595, 1465, 1545],
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[1595, 1630, 1515, 1635, 1625],
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[1520, 1455, 1450, 1480, 1445]
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],
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"BATCHES": 6,
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"SAMPLES": 5
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}

‎bugs_examples/vol1/dyes/dyes.init.json‎

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{
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"theta": 1500,
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"mu": [1500, 1500, 1500, 1500, 1500, 1500],
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"tau_between": 1,
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"tau_within": 1
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}

‎bugs_examples/vol1/epil/epil.data.json‎

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{
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"Age": [31, 30, 25, 36, 22, 29, 31, 42, 37, 28, 36, 24, 23, 36, 26, 26, 28, 31, 32, 21, 29, 21, 32, 25, 30, 40, 19, 22, 18, 32, 20, 30, 18, 24, 30, 35, 27, 20, 22, 28, 23, 40, 33, 21, 35, 25, 26, 25, 22, 32, 25, 35, 21, 41, 32, 26, 21, 36, 37],
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"Base": [11, 11, 6, 8, 66, 27, 12, 52, 23, 10, 52, 33, 18, 42, 87, 50, 18, 111, 18, 20, 12, 9, 17, 28, 55, 9, 10, 47, 76, 38, 19, 10, 19, 24, 31, 14, 11, 67, 41, 7, 22, 13, 46, 36, 38, 7, 36, 11, 151, 22, 41, 32, 56, 24, 16, 22, 25, 13, 12],
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"y": [
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[5, 3, 3, 3],
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[3, 5, 3, 3],
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[2, 4, 0, 5],
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[4, 4, 1, 4],
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[7, 18, 9, 21],
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[5, 2, 8, 7],
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[6, 4, 0, 2],
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[40, 20, 21, 12],
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[5, 6, 6, 5],
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[14, 13, 6, 0],
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[26, 12, 6, 22],
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[12, 6, 8, 4],
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[4, 4, 6, 2],
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[7, 9, 12, 14],
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[16, 24, 10, 9],
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[11, 0, 0, 5],
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[0, 0, 3, 3],
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[37, 29, 28, 29],
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[3, 5, 2, 5],
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[3, 0, 6, 7],
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[3, 4, 3, 4],
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[3, 4, 3, 4],
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[2, 3, 3, 5],
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[8, 12, 2, 8],
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[18, 24, 76, 25],
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[2, 1, 2, 1],
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[3, 1, 4, 2],
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[13, 15, 13, 12],
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[11, 14, 9, 8],
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[8, 7, 9, 4],
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[0, 4, 3, 0],
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[3, 6, 1, 3],
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[2, 6, 7, 4],
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[4, 3, 1, 3],
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[22, 17, 19, 16],
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[5, 4, 7, 4],
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[2, 4, 0, 4],
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[3, 7, 7, 7],
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[4, 18, 2, 5],
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[2, 1, 1, 0],
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[0, 2, 4, 0],
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[5, 4, 0, 3],
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[11, 14, 25, 15],
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[10, 5, 3, 8],
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[19, 7, 6, 7],
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[1, 1, 2, 3],
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[6, 10, 8, 8],
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[2, 1, 0, 0],
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[102, 65, 72, 63],
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[4, 3, 2, 4],
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[8, 6, 5, 7],
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[1, 3, 1, 5],
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[18, 11, 28, 13],
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[6, 3, 4, 0],
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[3, 5, 4, 3],
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[1, 23, 19, 8],
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[2, 3, 0, 1],
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[0, 0, 0, 0],
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[1, 4, 3, 2]
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],
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"V4": [0, 0, 0, 1],
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"BT_bar": 0.948377750564369,
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"BT": [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2.94443897916644, 2.2512917986065, 1.55814461804655, 0.916290731874155, 1.55814461804655, 1.79175946922805, 2.04769284336526, 1.25276296849537, 1.01160091167848, 2.81839825827108, 2.32727770558442, 0.559615787935423, 1.70474809223843, 1.17865499634165, 2.4423470353692, 2.19722457733622, 2.2512917986065, 0.559615787935423, 2.19722457733622, 1.01160091167848, 3.63098547569503, 1.70474809223843, 2.32727770558442, 2.07944154167984, 2.63905732961526, 1.79175946922805, 1.38629436111989, 1.70474809223843, 1.83258146374831, 1.17865499634165, 1.09861228866811],
68+
"Trt_bar": 0.525423728813559,
69+
"Trt": [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1],
70+
"log_Base4": [1.01160091167848, 1.01160091167848, 0.405465108108164, 0.693147180559945, 2.80336038090653, 1.90954250488444, 1.09861228866811, 2.56494935746154, 1.74919985480926, 0.916290731874155, 2.56494935746154, 2.11021320034659, 1.50407739677627, 2.35137525716348, 3.07961375753469, 2.52572864430826, 1.50407739677627, 3.32323584019244, 1.50407739677627, 1.6094379124341, 1.09861228866811, 0.810930216216329, 1.44691898293633, 1.94591014905531, 2.62103882411258, 0.810930216216329, 0.916290731874155, 2.46385324059017, 2.94443897916644, 2.2512917986065, 1.55814461804655, 0.916290731874155, 1.55814461804655, 1.79175946922805, 2.04769284336526, 1.25276296849537, 1.01160091167848, 2.81839825827108, 2.32727770558442, 0.559615787935423, 1.70474809223843, 1.17865499634165, 2.4423470353692, 2.19722457733622, 2.2512917986065, 0.559615787935423, 2.19722457733622, 1.01160091167848, 3.63098547569503, 1.70474809223843, 2.32727770558442, 2.07944154167984, 2.63905732961526, 1.79175946922805, 1.38629436111989, 1.70474809223843, 1.83258146374831, 1.17865499634165, 1.09861228866811],
71+
"log_Age": [3.43398720448515, 3.40119738166216, 3.2188758248682, 3.58351893845611, 3.09104245335832, 3.36729582998647, 3.43398720448515, 3.73766961828337, 3.61091791264422, 3.3322045101752, 3.58351893845611, 3.17805383034795, 3.13549421592915, 3.58351893845611, 3.25809653802148, 3.25809653802148, 3.3322045101752, 3.43398720448515, 3.46573590279973, 3.04452243772342, 3.36729582998647, 3.04452243772342, 3.46573590279973, 3.2188758248682, 3.40119738166216, 3.68887945411394, 2.94443897916644, 3.09104245335832, 2.89037175789616, 3.46573590279973, 2.99573227355399, 3.40119738166216, 2.89037175789616, 3.17805383034795, 3.40119738166216, 3.55534806148941, 3.29583686600433, 2.99573227355399, 3.09104245335832, 3.3322045101752, 3.13549421592915, 3.68887945411394, 3.49650756146648, 3.04452243772342, 3.55534806148941, 3.2188758248682, 3.25809653802148, 3.2188758248682, 3.09104245335832, 3.46573590279973, 3.2188758248682, 3.55534806148941, 3.04452243772342, 3.71357206670431, 3.46573590279973, 3.25809653802148, 3.04452243772342, 3.58351893845611, 3.61091791264422],
72+
"V4_bar": 0.25,
73+
"Visit": [-3, -1, 1, 3],
74+
"log_Age_bar": 3.31978350918588,
75+
"N": 59,
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"T": 4,
77+
"log_Base4_bar": 1.76795470039604
78+
}

‎bugs_examples/vol1/equiv/equiv.data.json‎

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{
2+
"Y": [
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[1.4, 1.65],
4+
[1.64, 1.57],
5+
[1.44, 1.58],
6+
[1.36, 1.68],
7+
[1.65, 1.69],
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[1.08, 1.31],
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[1.09, 1.43],
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[1.25, 1.44],
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[1.25, 1.39],
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[1.3, 1.52]
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],
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"sign": [1, -1],
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"group": [1, 1, -1, -1, -1, 1, 1, 1, -1, -1],
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"N": 10,
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"P": 2
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}

‎bugs_examples/vol1/equiv/equiv.init.json‎

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{
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"mu": 0,
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"delta": [0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
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"pi": 0,
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"phi": 0,
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"sigmasq1": 1,
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"sigmasq2": 1
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}

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