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Merge pull request #164 from stan-dev/github-actions
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‎.Rbuildignore

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^\.appveyor\.yml$
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^\.codecov\.yml$
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.github/*
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^\.github$

‎.appveyor.yml

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‎.codecov.yml

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‎.github/.gitignore

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*.html

‎.github/workflows/R-CMD-check.yaml

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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
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# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
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on:
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push:
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branches:
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- master
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pull_request:
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branches:
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- master
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name: R-CMD-check
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jobs:
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R-CMD-check:
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if: "! contains(github.event.head_commit.message, '[ci skip]')"
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runs-on: ${{ matrix.config.os }}
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name: ${{ matrix.config.os }} (${{ matrix.config.r }})
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strategy:
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fail-fast: false
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matrix:
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config:
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- {os: windows-latest, r: 'release'}
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- {os: macOS-latest, r: 'release'}
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- {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
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- {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
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env:
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R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
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RSPM: ${{ matrix.config.rspm }}
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/setup-r@v1
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with:
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r-version: ${{ matrix.config.r }}
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- uses: r-lib/actions/setup-pandoc@v1
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- name: Query dependencies
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run: |
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install.packages('remotes')
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
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shell: Rscript {0}
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- name: Cache R packages
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if: runner.os != 'Windows'
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uses: actions/cache@v2
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with:
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path: ${{ env.R_LIBS_USER }}
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key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
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- name: Install system dependencies
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if: runner.os == 'Linux'
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run: |
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while read -r cmd
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do
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eval sudo $cmd
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done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
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- name: Install dependencies
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run: |
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remotes::install_deps(dependencies = TRUE)
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remotes::install_cran("rcmdcheck")
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shell: Rscript {0}
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- name: Session info
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run: |
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options(width = 100)
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pkgs <- installed.packages()[, "Package"]
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sessioninfo::session_info(pkgs, include_base = TRUE)
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shell: Rscript {0}
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- name: Check
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env:
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_R_CHECK_CRAN_INCOMING_: false
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_R_CHECK_FORCE_SUGGESTS_: false
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run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes"), build_args = c("--no-build-vignettes"), error_on = "warning", check_dir = "check")
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shell: Rscript {0}
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- name: Show testthat output
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if: always()
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run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
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shell: bash
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- name: Upload check results
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if: failure()
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uses: actions/upload-artifact@master
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with:
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name: ${{ runner.os }}-r${{ matrix.config.r }}-results
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path: check

‎.github/workflows/codecov.yaml

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on:
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push:
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branches:
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- master
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pull_request:
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branches:
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- master
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name: test-coverage
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jobs:
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test-coverage-mac:
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name: "Mac"
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if: "! contains(github.event.head_commit.message, '[ci skip]')"
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runs-on: macOS-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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- uses: r-lib/actions/setup-r@master
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- uses: r-lib/actions/setup-pandoc@master
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- name: Query dependencies
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run: |
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install.packages('remotes')
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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shell: Rscript {0}
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- name: Cache R packages
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uses: actions/cache@v1
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with:
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path: ${{ env.R_LIBS_USER }}
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key: macOS-r-4.0-1-${{ hashFiles('.github/depends.Rds') }}
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restore-keys: macOS-r-4.0-1-
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- name: Install dependencies
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run: |
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install.packages(c("remotes"))
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remotes::install_deps(dependencies = TRUE)
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remotes::install_cran("covr")
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shell: Rscript {0}
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- name: Test coverage
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run: covr::codecov()
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shell: Rscript {0}
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test-coverage-windows:
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name: "Windows"
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if: "! contains(github.event.head_commit.message, '[ci skip]')"
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runs-on: windows-latest
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env:
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GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
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steps:
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- uses: actions/checkout@v2
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# - name: Set path for RTools 4.0
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# if: runner.os == 'Windows'
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# run: echo "C:/rtools40/usr/bin;C:/rtools40/mingw64/bin" | Out-File -Append -FilePath $env:GITHUB_PATH -Encoding utf8
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#
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# - name: Install mingw32-make and check toolchain path
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# if: runner.os == 'Windows'
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# run: |
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# pacman -Syu mingw-w64-x86_64-make --noconfirm
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# g++ --version
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# Get-Command g++ | Select-Object -ExpandProperty Definition
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# mingw32-make --version
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# Get-Command mingw32-make | Select-Object -ExpandProperty Definition
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# shell: powershell
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- uses: r-lib/actions/setup-r@master
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with:
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r-version: 'release'
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- uses: r-lib/actions/setup-pandoc@master
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- name: Query dependencies
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run: |
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install.packages('remotes')
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saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
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shell: Rscript {0}
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- name: Install dependencies
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run: |
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install.packages(c("remotes"))
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remotes::install_deps(dependencies = TRUE)
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remotes::install_cran("covr")
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shell: Rscript {0}
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- name: Test coverage
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run: covr::codecov()
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shell: Rscript {0}
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# - name: Test coverage
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# run: |
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# options(covr.gcov = 'C:/rtools40/mingw64/bin/gcov.exe');
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# covr::codecov(type = "all")
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# shell: Rscript {0}

‎.travis.yml

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‎README.md

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[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/loo?color=blue)](https://cran.r-project.org/web/packages/loo)
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[![RStudio_CRAN_mirror_downloads_badge](https://cranlogs.r-pkg.org/badges/loo?color=blue)](https://cran.r-project.org/web/packages/loo)
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[![codecov](https://codecov.io/gh/stan-dev/loo/branch/master/graph/badge.svg)](https://codecov.io/github/stan-dev/loo?branch=master)
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[![Travis-CI Build Status](https://travis-ci.org/stan-dev/loo.svg?branch=master)](https://travis-ci.org/stan-dev/loo)
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[![AppVeyor build status](https://ci.appveyor.com/api/projects/status/github/stan-dev/loo?branch=master&svg=true)](https://ci.appveyor.com/project/jgabry/loo)
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[![R-CMD-check](https://github.com/stan-dev/loo/workflows/R-CMD-check/badge.svg)](https://github.com/stan-dev/loo/actions)
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<!-- badges: end -->
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1110
### Efficient approximate leave-one-out cross-validation for fitted Bayesian models

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