Merge pull request #1085 from stan-dev/von_mises_cdf

Add von_mises_cdf, von_mises_lcdf, von_mises_lccdf

Author: rok-cesnovar

Jenkinsfile

@@ -283,12 +283,15 @@ pipeline {
 
                         unstash 'ubuntu-exe'
 
-                        sh """
-                            git clone --recursive https://github.com/stan-dev/math.git
-                            cp bin/stanc math/test/expressions/stanc
-                        """
-
                         script {
+                            sh """
+                                git clone --recursive https://github.com/stan-dev/math.git
+                            """
+                            utils.checkout_pr("math", "math", params.math_pr)
+                            sh """
+                                cp bin/stanc math/test/expressions/stanc
+                            """
+
                             dir("math") {
                                 sh """
                                     echo O=0 >> make/local

src/middle/Stan_math_signatures.ml

@@ -271,7 +271,7 @@ let distributions =
   ; (full_lpdf, "student_t", [DVReal; DVReal; DVReal; DVReal], AoS)
   ; (full_lpdf, "std_normal", [DVReal], AoS)
   ; (full_lpdf, "uniform", [DVReal; DVReal; DVReal], AoS)
-  ; ([Lpdf; Rng], "von_mises", [DVReal; DVReal; DVReal], AoS)
+  ; (full_lpdf, "von_mises", [DVReal; DVReal; DVReal], AoS)
   ; (full_lpdf, "weibull", [DVReal; DVReal; DVReal], AoS)
   ; ([Lpdf], "wiener", [DVReal; DVReal; DVReal; DVReal; DVReal], AoS)
   ; ([Lpdf], "wishart", [DMatrix; DReal; DMatrix], AoS) ]

test/integration/bad/missing_dist_suffix/deprecated_suffix.stan

@@ -1,5 +1,5 @@
 data {
 }
 model {
-    target += von_mises_ccdf_log(1, 0,1);
+    target += binomial_logit_ccdf_log(1, 0,1);
 }

test/integration/bad/missing_dist_suffix/non_existing_distribution_suffix1.stan

@@ -1,5 +1,5 @@
 data { 
 }
 model {  
-    target += von_mises_cdf(1|0,1);
+    target += binomial_logit_cdf(1|0,1);
 }

test/integration/bad/missing_dist_suffix/non_existing_distribution_suffix2.stan

@@ -1,5 +1,5 @@
 data { 
 }
 model {  
-    target += von_mises_lcdf(1|0,1);
+    target += binomial_logit_lcdf(1|0,1);
 }

test/integration/bad/missing_dist_suffix/non_existing_distribution_suffix3.stan

@@ -1,5 +1,5 @@
 data { 
 }
 model {  
-    target += von_mises_lccdf(1|0,1);
+    target += binomial_logit_lccdf(1|0,1);
 }

test/integration/bad/missing_dist_suffix/stanc.expected

@@ -20,16 +20,16 @@ Semantic error in 'completely_undefined2.stan', line 5, column 12 to column 23:
 
 Function 'foo_lpdf' is not implemented for distribution 'foo', use 'foo_lpmf' instead.
   $ ../../../../../install/default/bin/stanc deprecated_suffix.stan
-Semantic error in 'deprecated_suffix.stan', line 4, column 14 to column 40:
+Semantic error in 'deprecated_suffix.stan', line 4, column 14 to column 45:
    -------------------------------------------------
      2:  }
      3:  model {
-     4:      target += von_mises_ccdf_log(1, 0,1);
+     4:      target += binomial_logit_ccdf_log(1, 0,1);
                        ^
      5:  }
    -------------------------------------------------
 
-Function 'von_mises_ccdf_log' is not implemented for distribution 'von_mises'.
+Function 'binomial_logit_ccdf_log' is not implemented for distribution 'binomial_logit'.
   $ ../../../../../install/default/bin/stanc lpmf_lpdf_replacement1.stan
 Semantic error in 'lpmf_lpdf_replacement1.stan', line 5, column 14 to column 34:
    -------------------------------------------------
@@ -63,38 +63,38 @@ Semantic error in 'no_rng_suffix.stan', line 2, column 12 to column 55:
 
 Function 'multi_gp_cholesky_rng' is not implemented for distribution 'multi_gp_cholesky'.
   $ ../../../../../install/default/bin/stanc non_existing_distribution_suffix1.stan
-Semantic error in 'non_existing_distribution_suffix1.stan', line 4, column 14 to column 34:
+Semantic error in 'non_existing_distribution_suffix1.stan', line 4, column 14 to column 39:
    -------------------------------------------------
      2:  }
      3:  model {  
-     4:      target += von_mises_cdf(1|0,1);
+     4:      target += binomial_logit_cdf(1|0,1);
                        ^
      5:  }
    -------------------------------------------------
 
-Function 'von_mises_cdf' is not implemented for distribution 'von_mises'.
+Function 'binomial_logit_cdf' is not implemented for distribution 'binomial_logit'.
   $ ../../../../../install/default/bin/stanc non_existing_distribution_suffix2.stan
-Semantic error in 'non_existing_distribution_suffix2.stan', line 4, column 14 to column 35:
+Semantic error in 'non_existing_distribution_suffix2.stan', line 4, column 14 to column 40:
    -------------------------------------------------
      2:  }
      3:  model {  
-     4:      target += von_mises_lcdf(1|0,1);
+     4:      target += binomial_logit_lcdf(1|0,1);
                        ^
      5:  }
    -------------------------------------------------
 
-Function 'von_mises_lcdf' is not implemented for distribution 'von_mises'.
+Function 'binomial_logit_lcdf' is not implemented for distribution 'binomial_logit'.
   $ ../../../../../install/default/bin/stanc non_existing_distribution_suffix3.stan
-Semantic error in 'non_existing_distribution_suffix3.stan', line 4, column 14 to column 36:
+Semantic error in 'non_existing_distribution_suffix3.stan', line 4, column 14 to column 41:
    -------------------------------------------------
      2:  }
      3:  model {  
-     4:      target += von_mises_lccdf(1|0,1);
+     4:      target += binomial_logit_lccdf(1|0,1);
                        ^
      5:  }
    -------------------------------------------------
 
-Function 'von_mises_lccdf' is not implemented for distribution 'von_mises'.
+Function 'binomial_logit_lccdf' is not implemented for distribution 'binomial_logit'.
   $ ../../../../../install/default/bin/stanc non_existing_distribution_suffix4.stan
 Semantic error in 'non_existing_distribution_suffix4.stan', line 4, column 14 to column 41:
    -------------------------------------------------