update docs, work on vignettes

Author: adw96

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: tinyvamp
 Title: Modeling complex measurement error in microbiome experiments
-Version: 0.0.7.0
+Version: 1.0.0.0
 Authors@R: as.person(c(
     "David Clausen [aut]",
     "Amy Willis <adwillis@uw.edu> [aut, cre]"
@@ -21,7 +21,10 @@ Imports:
     Matrix,
     methods
 Suggests:
+    dplyr,
+    ggplot2,
     knitr,
+    numDeriv,
     phyloseq,
     rmarkdown,
     phyloseq,

README.md

@@ -12,6 +12,7 @@ status](https://codecov.io/gh/statdivlab/tinyvamp/branch/main/graph/badge.svg)](
 `tinyvamp` is a package for estimation and removal of measurement error in high-throughput sequencing data. 
 
 There are many use cases for `tinyvamp`; here are a few:
+
 - Estimating the detectability of different species using mock communities
 - Comparing experimental protocols (or batches) with respect to how they well they detect different species
 - Estimating "true" relative abundances after adjusting for differential detectability