Skip to content

Commit f809f17

Browse files
committed
feat: Add C implementation for @stdlib/stats/base/dists/planck/logpmf
--- type: pre_push_report description: Results of running various checks prior to pushing changes. report: - task: run_javascript_examples status: na - task: run_c_examples status: na - task: run_cpp_examples status: na - task: run_javascript_readme_examples status: na - task: run_c_benchmarks status: na - task: run_cpp_benchmarks status: na - task: run_fortran_benchmarks status: na - task: run_javascript_benchmarks status: na - task: run_julia_benchmarks status: na - task: run_python_benchmarks status: na - task: run_r_benchmarks status: na - task: run_javascript_tests status: na ---
1 parent b0b66d2 commit f809f17

File tree

17 files changed

+1379
-5
lines changed

17 files changed

+1379
-5
lines changed

lib/node_modules/@stdlib/stats/base/dists/planck/logpmf/README.md

Lines changed: 99 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -101,7 +101,7 @@ y = mylogpmf( 1.0 );
101101

102102
## Notes
103103

104-
- In virtually all cases, using the `logpmf` or `logcdf` functions is preferable to manually computing the logarithm of the `pmf` or `cdf`, respectively, since the latter is prone to overflow and underflow.
104+
- In virtually all cases, using the `logpmf` or `loglogpmf` functions is preferable to manually computing the logarithm of the `pmf` or `logpmf`, respectively, since the latter is prone to overflow and underflow.
105105

106106
</section>
107107

@@ -133,6 +133,104 @@ for ( i = 0; i < lambda.length; i++ ) {
133133

134134
<!-- /.examples -->
135135

136+
<!-- C interface documentation. -->
137+
138+
* * *
139+
140+
<section class="c">
141+
142+
## C APIs
143+
144+
<!-- Section to include introductory text. Make sure to keep an empty line after the intro `section` element and another before the `/section` close. -->
145+
146+
<section class="intro">
147+
148+
</section>
149+
150+
<!-- /.intro -->
151+
152+
<!-- C usage documentation. -->
153+
154+
<section class="usage">
155+
156+
### Usage
157+
158+
```c
159+
#include "stdlib/stats/base/dists/planck/logpmf.h"
160+
```
161+
162+
#### stdlib_base_dists_planck_logpmf( x, lambda )
163+
164+
Evaluates the logarithm of the [probability mass function][pmf] (PMF) of a Planck (discrete exponential) distribution with shape parameter `lambda`.
165+
166+
```c
167+
double out = stdlib_base_dists_planck_logpmf( 4.0 , 0.3 );
168+
// returns ~-2.5502
169+
```
170+
171+
The function accepts the following arguments:
172+
173+
- **x**: `[in] double` input value.
174+
- **lambda**: `[in] double` shape parameter.
175+
176+
```c
177+
double stdlib_base_dists_planck_logpmf( const double x, const double lambda );
178+
```
179+
180+
</section>
181+
182+
<!-- /.usage -->
183+
184+
<!-- C API usage notes. Make sure to keep an empty line after the `section` element and another before the `/section` close. -->
185+
186+
<section class="notes">
187+
188+
</section>
189+
190+
<!-- /.notes -->
191+
192+
<!-- C API usage examples. -->
193+
194+
<section class="examples">
195+
196+
### Examples
197+
198+
```c
199+
#include "stdlib/stats/base/dists/planck/logpmf.h"
200+
#include <stdlib.h>
201+
#include <stdio.h>
202+
static int random_discrete_uniform( const int min, const int max ) {
203+
return min + ( rand() % ( max - min + 1 ) );
204+
}
205+
206+
static double random_uniform( const double min, const double max ) {
207+
double v = (double)rand() / ( (double)RAND_MAX + 1.0 );
208+
return min + ( v * ( max - min ) );
209+
}
210+
211+
int main( void ) {
212+
double lambda;
213+
double y;
214+
int x;
215+
int i;
216+
217+
for ( i = 0; i < 10; i++ ) {
218+
x = random_discrete_uniform( 0, 5 );
219+
lambda = random_uniform( 0.1, 5.0 );
220+
y = stdlib_base_dists_planck_logpmf( x, lambda );
221+
printf( "x: %d, lambda: %lf, F(x; lambda): %lf\n", x, lambda ,y );
222+
}
223+
}
224+
```
225+
226+
</section>
227+
228+
<!-- /.examples -->
229+
230+
</section>
231+
232+
<!-- /.c -->
233+
136234
<!-- Section for related `stdlib` packages. Do not manually edit this section, as it is automatically populated. -->
137235

138236
<section class="related">

lib/node_modules/@stdlib/stats/base/dists/planck/logpmf/benchmark/benchmark.js

Lines changed: 12 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -21,8 +21,10 @@
2121
// MODULES //
2222

2323
var bench = require( '@stdlib/bench' );
24+
var Float64Array = require( '@stdlib/array/float64' );
2425
var discreteUniform = require( '@stdlib/random/array/discrete-uniform' );
25-
var uniform = require( '@stdlib/random/array/uniform' );
26+
var uniformBase = require( '@stdlib/random/base/uniform' );
27+
var discreteUniformBase = require( '@stdlib/random/base/discrete-uniform' );
2628
var isnan = require( '@stdlib/math/base/assert/is-nan' );
2729
var pkg = require( './../package.json' ).name;
2830
var logpmf = require( './../lib' );
@@ -32,16 +34,22 @@ var logpmf = require( './../lib' );
3234

3335
bench( pkg, function benchmark( b ) {
3436
var lambda;
37+
var len;
3538
var x;
3639
var y;
3740
var i;
3841

39-
x = discreteUniform( 100, 0, 40 );
40-
lambda = uniform( 100, 0.1, 10.0 );
42+
len = 100;
43+
x = new Float64Array( len );
44+
lambda = new Float64Array( len );
45+
for ( i = 0; i < len; i++ ) {
46+
x[i] = discreteUniformBase(0, 40);
47+
lambda[i] = uniformBase(1.0, 10.0);
48+
}
4149

4250
b.tic();
4351
for ( i = 0; i < b.iterations; i++ ) {
44-
y = logpmf( x[ i % x.length ], lambda[ i % lambda.length ] );
52+
y = logpmf( x[ i % len ], lambda[ i % len ] );
4553
if ( isnan( y ) ) {
4654
b.fail( 'should not return NaN' );
4755
}
Lines changed: 71 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,71 @@
1+
/**
2+
* @license Apache-2.0
3+
*
4+
* Copyright (c) 2025 The Stdlib Authors.
5+
*
6+
* Licensed under the Apache License, Version 2.0 (the "License");
7+
* you may not use this file except in compliance with the License.
8+
* You may obtain a copy of the License at
9+
*
10+
* http://www.apache.org/licenses/LICENSE-2.0
11+
*
12+
* Unless required by applicable law or agreed to in writing, software
13+
* distributed under the License is distributed on an "AS IS" BASIS,
14+
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15+
* See the License for the specific language governing permissions and
16+
* limitations under the License.
17+
*/
18+
19+
'use strict';
20+
21+
// MODULES //
22+
23+
var resolve = require( 'path' ).resolve;
24+
var bench = require( '@stdlib/bench' );
25+
var Float64Array = require( '@stdlib/array/float64' );
26+
var uniformBase = require( '@stdlib/random/base/uniform' );
27+
var discreteUniformBase = require( '@stdlib/random/base/discrete-uniform' );
28+
var isnan = require( '@stdlib/math/base/assert/is-nan' );
29+
var tryRequire = require( '@stdlib/utils/try-require' );
30+
var pkg = require( './../package.json' ).name;
31+
32+
33+
// VARIABLES //
34+
35+
var logpmf = tryRequire( resolve( __dirname, './../lib/native.js' ) );
36+
var opts = {
37+
'skip': ( logpmf instanceof Error )
38+
};
39+
40+
41+
// MAIN //
42+
43+
bench( pkg+'::native', opts, function benchmark( b ) {
44+
var lambda;
45+
var len;
46+
var x;
47+
var y;
48+
var i;
49+
50+
len = 100;
51+
x = new Float64Array( len );
52+
lambda = new Float64Array( len );
53+
for ( i = 0; i < len; i++ ) {
54+
x[i] = discreteUniformBase(0, 40);
55+
lambda[i] = uniformBase(1.0, 10.0);
56+
}
57+
58+
b.tic();
59+
for ( i = 0; i < b.iterations; i++ ) {
60+
y = logpmf( x[ i % len ], lambda[ i % len ] );
61+
if ( isnan( y ) ) {
62+
b.fail( 'should not return NaN' );
63+
}
64+
}
65+
b.toc();
66+
if ( isnan( y ) ) {
67+
b.fail( 'should not return NaN' );
68+
}
69+
b.pass( 'benchmark finished' );
70+
b.end();
71+
});
Lines changed: 146 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,146 @@
1+
#/
2+
# @license Apache-2.0
3+
#
4+
# Copyright (c) 2024 The Stdlib Authors.
5+
#
6+
# Licensed under the Apache License, Version 2.0 (the "License");
7+
# you may not use this file except in compliance with the License.
8+
# You may obtain a copy of the License at
9+
#
10+
# http://www.apache.org/licenses/LICENSE-2.0
11+
#
12+
# Unless required by applicable law or agreed to in writing, software
13+
# distributed under the License is distributed on an "AS IS" BASIS,
14+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15+
# See the License for the specific language governing permissions and
16+
# limitations under the License.
17+
#/
18+
19+
# VARIABLES #
20+
21+
ifndef VERBOSE
22+
QUIET := @
23+
else
24+
QUIET :=
25+
endif
26+
27+
# Determine the OS ([1][1], [2][2]).
28+
#
29+
# [1]: https://en.wikipedia.org/wiki/Uname#Examples
30+
# [2]: http://stackoverflow.com/a/27776822/2225624
31+
OS ?= $(shell uname)
32+
ifneq (, $(findstring MINGW,$(OS)))
33+
OS := WINNT
34+
else
35+
ifneq (, $(findstring MSYS,$(OS)))
36+
OS := WINNT
37+
else
38+
ifneq (, $(findstring CYGWIN,$(OS)))
39+
OS := WINNT
40+
else
41+
ifneq (, $(findstring Windows_NT,$(OS)))
42+
OS := WINNT
43+
endif
44+
endif
45+
endif
46+
endif
47+
48+
# Define the program used for compiling C source files:
49+
ifdef C_COMPILER
50+
CC := $(C_COMPILER)
51+
else
52+
CC := gcc
53+
endif
54+
55+
# Define the command-line options when compiling C files:
56+
CFLAGS ?= \
57+
-std=c99 \
58+
-O3 \
59+
-Wall \
60+
-pedantic
61+
62+
# Determine whether to generate position independent code ([1][1], [2][2]).
63+
#
64+
# [1]: https://gcc.gnu.org/onlinedocs/gcc/Code-Gen-Options.html#Code-Gen-Options
65+
# [2]: http://stackoverflow.com/questions/5311515/gcc-fpic-option
66+
ifeq ($(OS), WINNT)
67+
fPIC ?=
68+
else
69+
fPIC ?= -fPIC
70+
endif
71+
72+
# List of includes (e.g., `-I /foo/bar -I /beep/boop/include`):
73+
INCLUDE ?=
74+
75+
# List of source files:
76+
SOURCE_FILES ?=
77+
78+
# List of libraries (e.g., `-lopenblas -lpthread`):
79+
LIBRARIES ?=
80+
81+
# List of library paths (e.g., `-L /foo/bar -L /beep/boop`):
82+
LIBPATH ?=
83+
84+
# List of C targets:
85+
c_targets := benchmark.out
86+
87+
88+
# RULES #
89+
90+
#/
91+
# Compiles source files.
92+
#
93+
# @param {string} [C_COMPILER] - C compiler (e.g., `gcc`)
94+
# @param {string} [CFLAGS] - C compiler options
95+
# @param {(string|void)} [fPIC] - compiler flag determining whether to generate position independent code (e.g., `-fPIC`)
96+
# @param {string} [INCLUDE] - list of includes (e.g., `-I /foo/bar -I /beep/boop/include`)
97+
# @param {string} [SOURCE_FILES] - list of source files
98+
# @param {string} [LIBPATH] - list of library paths (e.g., `-L /foo/bar -L /beep/boop`)
99+
# @param {string} [LIBRARIES] - list of libraries (e.g., `-lopenblas -lpthread`)
100+
#
101+
# @example
102+
# make
103+
#
104+
# @example
105+
# make all
106+
#/
107+
all: $(c_targets)
108+
109+
.PHONY: all
110+
111+
#/
112+
# Compiles C source files.
113+
#
114+
# @private
115+
# @param {string} CC - C compiler (e.g., `gcc`)
116+
# @param {string} CFLAGS - C compiler options
117+
# @param {(string|void)} fPIC - compiler flag determining whether to generate position independent code (e.g., `-fPIC`)
118+
# @param {string} INCLUDE - list of includes (e.g., `-I /foo/bar`)
119+
# @param {string} SOURCE_FILES - list of source files
120+
# @param {string} LIBPATH - list of library paths (e.g., `-L /foo/bar`)
121+
# @param {string} LIBRARIES - list of libraries (e.g., `-lopenblas`)
122+
#/
123+
$(c_targets): %.out: %.c
124+
$(QUIET) $(CC) $(CFLAGS) $(fPIC) $(INCLUDE) -o $@ $(SOURCE_FILES) $< $(LIBPATH) -lm $(LIBRARIES)
125+
126+
#/
127+
# Runs compiled benchmarks.
128+
#
129+
# @example
130+
# make run
131+
#/
132+
run: $(c_targets)
133+
$(QUIET) ./$<
134+
135+
.PHONY: run
136+
137+
#/
138+
# Removes generated files.
139+
#
140+
# @example
141+
# make clean
142+
#/
143+
clean:
144+
$(QUIET) -rm -f *.o *.out
145+
146+
.PHONY: clean

0 commit comments

Comments
 (0)