R CMD check

Author: multimeric

NAMESPACE

@@ -39,9 +39,13 @@ importFrom(dplyr,tbl)
 importFrom(dplyr,transmute)
 importFrom(duckdb,duckdb)
 importFrom(glue,glue)
+importFrom(httr,GET)
+importFrom(httr,HEAD)
 importFrom(httr,modify_url)
 importFrom(httr,parse_url)
 importFrom(httr,progress)
+importFrom(httr,stop_for_status)
+importFrom(httr,write_disk)
 importFrom(methods,as)
 importFrom(purrr,imap)
 importFrom(purrr,keep)

R/query.R

@@ -286,6 +286,8 @@ sync_assay_files <- function(
 }
 
 #' Synchronises a single remote file with a local path
+#' @importFrom httr write_disk GET stop_for_status
+#' @importFrom cli cli_abort cli_alert_info
 #' @noRd
 sync_remote_file <- function(full_url, output_file, ...) {
     if (!file.exists(output_file)) {

R/unharmonised.R

@@ -67,7 +67,7 @@ get_unharmonised_dataset = function(
 #' harmonised <- get_metadata() |> dplyr::filter(tissue == "kidney blood vessel")
 #' unharmonised <- get_unharmonised_metadata(harmonised)
 get_unharmonised_metadata = function(metadata, ...){
-    args = list(...)
+    args <- list(...)
     metadata |>
         collect() |>
         group_by(.data$file_id) |>

R/utils.R

@@ -3,6 +3,7 @@
 #' @return The file size of each of the files pointed to by the provided URL,
 #' in gigabytes, as double vector
 #' @importFrom purrr map_dbl
+#' @importFrom httr HEAD
 #' @keywords internal
 url_file_size = function(urls){
     map_dbl(urls, function(url){