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lines changed Original file line number Diff line number Diff line change @@ -285,6 +285,35 @@ The `raw` assay includes RNA abundance in the positive real scale (not transform
285285
286286The ` cpm ` assay includes counts per million.
287287
288+ # Installation and getting-started problems
289+
290+ ** Problem:** Default R cache path including non-standard characters (e.g. dash)
291+
292+ ``` {r, eval=FALSE}
293+ get_metadata()
294+
295+ Error in `db_query_fields.DBIConnection()`:
296+ ! Can't query fields.
297+ Caused by error:
298+ ! Parser Error: syntax error at or near "/"
299+ LINE 2: FROM /Users/mariadoyle/Library/Cach...
300+ ```
301+
302+ ** Solution:** Setup custom cache path (e.g. user home directory)
303+
304+ ``` {r, eval=FALSE}
305+ get_metadata(cache_directory = path.expand('~'))
306+ ```
307+
308+ ** Problem:** namespace ‘dbplyr’ 2.2.1 is being loaded, but >= 2.3.0 is required
309+
310+ ** Solution:** Install new dbplyr
311+
312+ ``` {r, eval=FALSE}
313+ install.packages("dbplyr")
314+ ```
315+
316+
288317---
289318
290319This project has been funded by
Original file line number Diff line number Diff line change @@ -318,6 +318,36 @@ CELLxGENE include a mix of scales and transformations specified in the
318318
319319The ` cpm ` assay includes counts per million.
320320
321+ # Installation and getting-started problems
322+
323+ ** Problem:** Default R cache path including non-standard characters
324+ (e.g. dash)
325+
326+ ``` r
327+ get_metadata()
328+
329+ Error in `db_query_fields.DBIConnection()` :
330+ ! Can ' t query fields.
331+ Caused by error:
332+ ! Parser Error: syntax error at or near "/"
333+ LINE 2: FROM /Users/mariadoyle/Library/Cach...
334+ ```
335+
336+ **Solution:** Setup custom cache path (e.g. user home directory)
337+
338+ ``` r
339+ get_metadata(cache_directory = path.expand(' ~ ' ))
340+ ```
341+
342+ **Problem:** namespace ‘dbplyr’ 2.2.1 is being loaded, but \> = 2.3.0 is
343+ required
344+
345+ **Solution:** Install new dbplyr
346+
347+ ``` r
348+ install.packages("dbplyr")
349+ ```
350+
321351------------------------------------------------------------------------
322352
323353This project has been funded by
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